Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

FLIRT - KW.1.1 with S:T95S, S:R346T. 10 seqs, two regions in Australia . #1504

Closed
Sinickle opened this issue Apr 9, 2024 · 5 comments
Closed

FLIRT - KW.1.1 with S:T95S, S:R346T. 10 seqs, two regions in Australia . #1504

Sinickle opened this issue Apr 9, 2024 · 5 comments
Labels
Convergent Trio 346/456/572 designated FLIRT combo S:R346T+S:F456L+S:T572I S:95
Milestone
KW.1.1.1 LG.1

Comments

@Sinickle
Copy link

Sinickle commented Apr 9, 2024 •
edited by FedeGueli
Loading

KW.1.1 which already had F456L, T572i, has gained T95S, R346T in a single step.

Earliest seq: 2/27, Victoria Australia.
Most recent seq: 3/18, SA, Australia.
nuc mutations: C21846G, G22599C, C27600T
Query: C21846G, G22599C, C27600T,T3565C (Edited)

https://genome.ucsc.edu/cgi-bin/hgPhyloPlace
image

See this post for more info on S:95 mutations in JN.1*
@xz-keg xz-keg added S:95 S:t572I FLiRT FLiRT is an Acronym for S:R346T + S:F456L labels Apr 10, 2024
@FedeGueli FedeGueli mentioned this issue Apr 10, 2024
Closed
@FedeGueli
Copy link

FedeGueli commented Apr 10, 2024 •
edited
Loading

Thx @Sinickle this was Singlet 21 of #1089 but the query of the first sample didn't catch the others. thank you for proposing adding a query to the proposal ( C21846G, G22599C, C27600T,T3565C)
 

@FedeGueli
Copy link

thx @aviczhl2 for labels

@xz-keg xz-keg added S:572 FLIRT combo S:R346T+S:F456L+S:T572I and removed S:t572I S:572 FLiRT FLiRT is an Acronym for S:R346T + S:F456L labels Apr 10, 2024
@FedeGueli FedeGueli changed the title FLIRT - KW.1.1 with S:T95S, S:R346T. 3 seqs, two regions in Australia . FLIRT - KW.1.1 with S:T95S, S:R346T. 5 seqs, two regions in Australia . May 7, 2024
@FedeGueli
Copy link

+2 SA

@FedeGueli FedeGueli changed the title FLIRT - KW.1.1 with S:T95S, S:R346T. 5 seqs, two regions in Australia . FLIRT - KW.1.1 with S:T95S, S:R346T. 10 seqs, two regions in Australia . May 15, 2024
@FedeGueli
Copy link

+5 South Australia please propose it.

@FedeGueli FedeGueli added To be proposed Green light for proposal designated and removed To be proposed Green light for proposal labels May 15, 2024
@FedeGueli FedeGueli added this to the KW.1.1.1 LG.1 milestone May 16, 2024
FedeGueli referenced this issue in cov-lineages/pango-designation May 16, 2024
@corneliusroemer
Designate LG.1 (KW.1.1.1.1, S:R346T)
bd06dd4
@FedeGueli
Copy link

Designated KW.1.1.1 (>95S) and LG.1 (>346T) via cov-lineages/pango-designation@bd06dd4

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
Convergent Trio 346/456/572 designated FLIRT combo S:R346T+S:F456L+S:T572I S:95
Projects
None yet
Milestone
KW.1.1.1 LG.1
Development

No branches or pull requests
3 participants
@xz-keg @FedeGueli @Sinickle