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Assess nf-core/phylonetwork #83

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muffato opened this issue Jun 18, 2024 · 1 comment
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Assess nf-core/phylonetwork #83

muffato opened this issue Jun 18, 2024 · 1 comment
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muffato commented Jun 18, 2024

nf-core/phylonetwork is a very new initiative for inferring phylogenetic networks from whole genomes, performing local ancestry analysis, and maybe some downstream tests of functional enrichment etc associated with admixed regions – which sounds very relevant for some population genomics studies !

The workflow diagram is on the Slack discussion (it would accept VCFs as input !) and a Slack channel was created this afternoon.

We should take a look at this once we're done with #80.

@muffato muffato added the question Further information is requested label Jun 18, 2024
@muffato muffato moved this from Todo to Triage in Genome After Party Jun 18, 2024
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muffato commented Sep 17, 2024

Currently there is no planned overlap with what we wanted to do. Since we know members of the phylonetwork development team, we can make sure that there is no duplication of effort.

@muffato muffato closed this as completed Sep 17, 2024
@github-project-automation github-project-automation bot moved this from Triage to Done in Genome After Party Sep 17, 2024
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