Runs of Homozygosity

[muffato]

Description of feature

Plink can do that.

This would be very valuable, though I think the challenge here is that this would often be species specific, e.g. you need to define the number of SNPs and the minimum length. However I think the defaults might be a reasonable starting point.

[muffato]

It seems possible with bcftools as well: https://samtools.github.io/bcftools/howtos/roh-calling.html