diff --git a/CHANGELOG.md b/CHANGELOG.md index f418dc0af0..81cb62ede1 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -49,6 +49,7 @@ - Update codecov/codecov-action action to v5 ([#3283](https://github.com/nf-core/tools/pull/3283)) - Update python:3.12-slim Docker digest to 2a6386a ([#3284](https://github.com/nf-core/tools/pull/3284)) - Update pre-commit hook astral-sh/ruff-pre-commit to v0.8.0 ([#3299](https://github.com/nf-core/tools/pull/3299)) +- Remove toList() channel operation from inside onComplete block ([#3304](https://github.com/nf-core/tools/pull/3304)) ## [v3.0.2 - Titanium Tapir Patch](https://github.com/nf-core/tools/releases/tag/3.0.2) - [2024-10-11] diff --git a/nf_core/pipeline-template/subworkflows/local/utils_nfcore_pipeline_pipeline/main.nf b/nf_core/pipeline-template/subworkflows/local/utils_nfcore_pipeline_pipeline/main.nf index be5776b836..06692f1dc9 100644 --- a/nf_core/pipeline-template/subworkflows/local/utils_nfcore_pipeline_pipeline/main.nf +++ b/nf_core/pipeline-template/subworkflows/local/utils_nfcore_pipeline_pipeline/main.nf @@ -140,6 +140,10 @@ workflow PIPELINE_COMPLETION { summary_params = [:] {%- endif %} + {%- if multiqc %} + def multiqc_reports = multiqc_report.toList() + {%- endif %} + // // Completion email and summary // @@ -153,7 +157,7 @@ workflow PIPELINE_COMPLETION { plaintext_email, outdir, monochrome_logs, - {% if multiqc %}multiqc_report.toList(){% else %}[]{% endif %} + {% if multiqc %}multiqc_reports.getVal(),{% else %}[]{% endif %} ) } {%- endif %}