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Command error:
Traceback (most recent call last):
File "/lustre/scratch123/tol/teams/tolit/users/tolpipe/registered_workflows/prod/sanger-tol/genomenote-1.2.0/workflow/bin/create_table.py", line 182, in <module>
sys.exit(main())
File "/lustre/scratch123/tol/teams/tolit/users/tolpipe/registered_workflows/prod/sanger-tol/genomenote-1.2.0/workflow/bin/create_table.py", line 171, in main
ncbi_stats(args.genome, args.sequence, writer)
File "/lustre/scratch123/tol/teams/tolit/users/tolpipe/registered_workflows/prod/sanger-tol/genomenote-1.2.0/workflow/bin/create_table.py", line 81, in ncbi_stats
writer.writerow(["Scaffolds", stats["number_of_scaffolds"]])
KeyError: 'number_of_scaffolds'
Failure is on assembly GCA_963966575.1 which lacks several expected fields in assembly stats:
Description of the bug
Key error from
create_table.py
:Failure is on assembly
GCA_963966575.1
which lacks several expected fields in assembly stats:Command used and terminal output
No response
Relevant files
No response
System information
No response
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