From 713bf1f79a0bc917926984b9141bb21cb2aea56a Mon Sep 17 00:00:00 2001
From: Matthieu Muffato <mm49@sanger.ac.uk>
Date: Thu, 3 Aug 2023 12:11:26 +0000
Subject: [PATCH] Testing the -s=3 parameter of metaeuk

---
 conf/modules.config | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/conf/modules.config b/conf/modules.config
index ebf62694..1b6938b1 100644
--- a/conf/modules.config
+++ b/conf/modules.config
@@ -30,7 +30,7 @@ process {
 
     withName: "BUSCO" {
         scratch = true
-        ext.args = "--mode genome --force"
+        ext.args = "--mode genome --force --metaeuk_parameters '\"-s=3\"' --metaeuk_rerun_parameters '\"-s=3\"'"
     }
 
     withName: "DIAMOND_BLASTP" {