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Parameters to Reproduce Figure 8 in ICML paper #31

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Chibuikem709 opened this issue Oct 6, 2022 · 0 comments
Open

Parameters to Reproduce Figure 8 in ICML paper #31

Chibuikem709 opened this issue Oct 6, 2022 · 0 comments

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@Chibuikem709
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Hello!
I am working on a project comparing different clustering methods for single-cell, and I am using the Zeisel et al. 2015 data set. The results presented in Figure 8 look really good, and I am looking to reproduce the BISCUIT results found in Figure 8 Panel 2. Unfortunately, I can't seem to get the results using 3005 cells, 558 genes, and an alpha = 0.005. What were the parameters used to get this? When I put 558 genes in the parameters, does it select the same 558 genes as the ones used to generate Figure 8's results?
Thanks for such a well-documented repo, too! It was so easy to get up and running!

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