From 526ac213449149c31081ff299025889e39484d9e Mon Sep 17 00:00:00 2001 From: Louis Bergelson Date: Wed, 2 Jan 2019 15:42:11 -0500 Subject: [PATCH] Deprecated htsjdk.samtools.apps package. * deprecated TimeChannel and TimeRandomAccesFile * these are two tools which were probably used for testing at some point but should not be part of the htsjdk distribution --- src/main/java/htsjdk/samtools/apps/TimeChannel.java | 2 ++ src/main/java/htsjdk/samtools/apps/TimeRandomAccessFile.java | 2 ++ 2 files changed, 4 insertions(+) diff --git a/src/main/java/htsjdk/samtools/apps/TimeChannel.java b/src/main/java/htsjdk/samtools/apps/TimeChannel.java index e3f707afcf..3db96fdc59 100644 --- a/src/main/java/htsjdk/samtools/apps/TimeChannel.java +++ b/src/main/java/htsjdk/samtools/apps/TimeChannel.java @@ -29,7 +29,9 @@ /** * @author alecw@broadinstitute.org + * @deprecated This is deprecated with no replacement. 1/19 */ +@Deprecated public class TimeChannel { public static void main(String[] args) throws Exception { long fileSize = new File(args[0]).length(); diff --git a/src/main/java/htsjdk/samtools/apps/TimeRandomAccessFile.java b/src/main/java/htsjdk/samtools/apps/TimeRandomAccessFile.java index bebb948c31..e0cf35a024 100644 --- a/src/main/java/htsjdk/samtools/apps/TimeRandomAccessFile.java +++ b/src/main/java/htsjdk/samtools/apps/TimeRandomAccessFile.java @@ -28,7 +28,9 @@ /** * @author alecw@broadinstitute.org + * @deprecated This is deprecated with no replacement. 1/19 */ +@Deprecated public class TimeRandomAccessFile { public static void main(String[] args) throws Exception { RandomAccessFile raf = new RandomAccessFile(new File(args[0]), "r");