From ca43cd3df3664ae48a63545de6ec83617cb97e65 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Daniel=20G=C3=B3mez-S=C3=A1nchez?=
 <daniel.gomez.sanchez@hotmail.es>
Date: Sun, 28 Oct 2018 23:47:59 +0100
Subject: [PATCH] Deprecate SQTagUtil

---
 src/main/java/htsjdk/samtools/SQTagUtil.java | 2 ++
 1 file changed, 2 insertions(+)
 mode change 100644 => 100755 src/main/java/htsjdk/samtools/SQTagUtil.java

diff --git a/src/main/java/htsjdk/samtools/SQTagUtil.java b/src/main/java/htsjdk/samtools/SQTagUtil.java
old mode 100644
new mode 100755
index daee4c3ded..4038e698cd
--- a/src/main/java/htsjdk/samtools/SQTagUtil.java
+++ b/src/main/java/htsjdk/samtools/SQTagUtil.java
@@ -27,7 +27,9 @@
  * Utility methods for encoding and decoding the SQ tag value of SAMRecord.
  * 
  * @author alecw@broadinstitute.org
+ * @deprecated since 11/2018. SQ is a reserved tag that shouldn't be used and this code untested.
  */
+@Deprecated
 public class SQTagUtil {
     /**
      * The ordinals of these are stored in the high-order 2 bits of each byte of the SQ tag.