From b74b3323fb0b4e4fc739e550b90c3c93dede7fc1 Mon Sep 17 00:00:00 2001 From: Yossi Farjoun Date: Wed, 26 Oct 2016 20:57:23 -0400 Subject: [PATCH] - added another testcase --- .../SAMSequenceDictionaryExtractorTest.java | 22 +++++++++---------- 1 file changed, 11 insertions(+), 11 deletions(-) diff --git a/src/test/java/htsjdk/variant/utils/SAMSequenceDictionaryExtractorTest.java b/src/test/java/htsjdk/variant/utils/SAMSequenceDictionaryExtractorTest.java index a443ae4f23..2f9b9dc544 100644 --- a/src/test/java/htsjdk/variant/utils/SAMSequenceDictionaryExtractorTest.java +++ b/src/test/java/htsjdk/variant/utils/SAMSequenceDictionaryExtractorTest.java @@ -40,15 +40,16 @@ public class SAMSequenceDictionaryExtractorTest { @DataProvider(name = "testExtractDictionaries") public Object[][] dictionaries() { return new Object[][]{ - new Object[]{"test1_comp.interval_list", "test1.dict"}, - new Object[]{"test1.vcf", "test1.dict"}, - new Object[]{"test1.dict", "test1.dict"}, - new Object[]{"empty.interval_list", "test1.dict"}, - new Object[]{"Homo_sapiens_assembly18.trimmed.fasta", "Homo_sapiens_assembly18.trimmed.dict"}, - new Object[]{"test2_comp.interval_list", "Homo_sapiens_assembly18.trimmed.dict"}, - new Object[]{"ScreenSamReads.100.input.sam", "test3_comp.interval_list"}, - new Object[]{"ScreenSamReads.100.input.bam", "test3_comp.interval_list"}, - new Object[]{"ScreenSamReads.100.input.cram", "test3_comp.interval_list"}, + {"test1_comp.interval_list", "test1.dict"}, + {"test1.vcf", "test1.dict"}, + {"test1.dict", "test1.dict"}, + {"empty.interval_list", "test1.dict"}, + {"Homo_sapiens_assembly18.trimmed.fasta", "Homo_sapiens_assembly18.trimmed.dict"}, + {"test2_comp.interval_list", "Homo_sapiens_assembly18.trimmed.dict"}, + {"ScreenSamReads.100.input.sam", "test3_comp.interval_list"}, + {"ScreenSamReads.100.input.bam", "test3_comp.interval_list"}, + {"ScreenSamReads.100.input.cram", "test3_comp.interval_list"}, + {"ScreenSamReads.100.input.cram", "ScreenSamReads.100.input.dict"} }; } @@ -59,8 +60,7 @@ public void testExtractDictionary(final String dictSource, final String dictExpe final SAMSequenceDictionary dict1 = SAMSequenceDictionaryExtractor.extractDictionary(dictSourceFile); final SAMSequenceDictionary dict2 = SAMSequenceDictionaryExtractor.extractDictionary(dictExpectedFile); - Assert.assertTrue(SequenceUtil.areSequenceDictionariesEqual(dict1, - dict2)); + Assert.assertTrue(SequenceUtil.areSequenceDictionariesEqual(dict1, dict2)); Assert.assertTrue(dict1.md5().equals(dict2.md5())); } }