From 4ed2a46294608091394d43089c957333d1454dc8 Mon Sep 17 00:00:00 2001
From: kojix2 <2xijok@gmail.com>
Date: Sun, 12 Jun 2022 20:16:59 +0900
Subject: [PATCH] Fix minor typo in VCF specs

---
 VCFv4.1.tex | 2 +-
 VCFv4.2.tex | 2 +-
 2 files changed, 2 insertions(+), 2 deletions(-)

diff --git a/VCFv4.1.tex b/VCFv4.1.tex
index d791d3937..381ffb092 100644
--- a/VCFv4.1.tex
+++ b/VCFv4.1.tex
@@ -525,7 +525,7 @@ \subsection{Specifying complex rearrangements with breakends}
 
 An arbitrary rearrangement event can be summarized as a set of novel \textbf{adjacencies}. Each adjacency ties together $2$ \textbf{breakends}. The two breakends at either end of a novel adjacency are called \textbf{mates}.
 
-There is one line of VCF (i.e.\ one record) for each of the two breakends in a novel adjacency. A breakend record is identified with the tag ``SYTYPE=BND'' in the INFO field. The REF field of a breakend record indicates a base or sequence s of bases beginning at position POS, as in all VCF records. The ALT field of a breakend record indicates a replacement for s. This ``breakend replacement'' has three parts:
+There is one line of VCF (i.e.\ one record) for each of the two breakends in a novel adjacency. A breakend record is identified with the tag ``SVTYPE=BND'' in the INFO field. The REF field of a breakend record indicates a base or sequence s of bases beginning at position POS, as in all VCF records. The ALT field of a breakend record indicates a replacement for s. This ``breakend replacement'' has three parts:
 \begin{enumerate}
   \item The string t that replaces places s. The string t may be an extended version of s if some novel bases are inserted during the formation of the novel adjacency.
   \item The position p of the mate breakend, indicated by a string of the form ``chr:pos''. This is the location of the first mapped base in the piece being joined at this novel adjacency.
diff --git a/VCFv4.2.tex b/VCFv4.2.tex
index ca8e2a998..5983b5b00 100644
--- a/VCFv4.2.tex
+++ b/VCFv4.2.tex
@@ -542,7 +542,7 @@ \subsection{Specifying complex rearrangements with breakends}
 
 An arbitrary rearrangement event can be summarized as a set of novel \textbf{adjacencies}. Each adjacency ties together $2$ \textbf{breakends}. The two breakends at either end of a novel adjacency are called \textbf{mates}.
 
-There is one line of VCF (i.e.\ one record) for each of the two breakends in a novel adjacency. A breakend record is identified with the tag ``SYTYPE=BND'' in the INFO field. The REF field of a breakend record indicates a base or sequence s of bases beginning at position POS, as in all VCF records. The ALT field of a breakend record indicates a replacement for s. This ``breakend replacement'' has three parts:
+There is one line of VCF (i.e.\ one record) for each of the two breakends in a novel adjacency. A breakend record is identified with the tag ``SVTYPE=BND'' in the INFO field. The REF field of a breakend record indicates a base or sequence s of bases beginning at position POS, as in all VCF records. The ALT field of a breakend record indicates a replacement for s. This ``breakend replacement'' has three parts:
 \begin{enumerate}
   \item The string t that replaces places s. The string t may be an extended version of s if some novel bases are inserted during the formation of the novel adjacency.
   \item The position p of the mate breakend, indicated by a string of the form ``chr:pos''. This is the location of the first mapped base in the piece being joined at this novel adjacency.