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htsget start-end #369
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Hi @rhdolin (sorry for the slow reply) -- here are three ideas:
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Thank you Mike. I may be thinking about this wrong, but I'm envisioning a use case - I need to extract all variants in TPMT gene for my decision support application, and I know nothing about your genomic data server. I was under the impression that there is sufficient variability in the representation of genomic build in the VCF Header, that you'd have to revert to manual inspection of the header to glean the build, which doesn't seem ideal. It seems as though it would be useful, to allow the query to request a range of positions, based on a build. If I simply tell you I want all variants at Chr 6: 18128545-18155374, what can you do with that? This assumes that the person submitting the query already knows something about the files being queried. |
Can someone explain how you'd process htsget start-end parameters if your repository has build37 and build38 VCFs? Thanks!
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