DESCRIPTION

Package: conliga
Type: Package
Title: [CO]py [N]umber from [LI]NE1 [G]enomic [A]mplicons
Version: 0.1.0
Date: 2018-07-30
Authors@R: person("Sam", "Abujudeh", email = "sam.abujudeh@cruk.cam.ac.uk",
                  role = c("aut", "cre"))
Maintainer: Sam Abujudeh <sam.abujudeh@cruk.cam.ac.uk>
Description: Infer relative copy number profiles from FAST-SeqS (and similar) data.
License: GPLv2
Depends:
  R (>= 3.2.3),
  R (<= 3.5.0)
Imports:
  Rcpp (>= 0.12.3),
  magrittr (>= 1.5),
  tibble (>= 1.1),
  ggplot2 (>= 2.2.1),
  tidyr (>= 0.6.0),
  dplyr (>= 0.4.3),
  readr (>= 1.0.0),
  purrr (>= 0.2.5),
  tidyselect (>= 0.2.4),
  matrixStats (>= 0.50.1),
  KernSmooth (>= 2.23-15),
  grid,
  gridExtra (>= 2.0.0),
  parallel,
  scales (>= 0.4.1),
  ggthemes (>= 3.4.0),
  plyr (>= 1.8.3),
  colorRamps (>= 2.3),
  RColorBrewer (>= 1.1-2),
  GenomicRanges (>= 1.22.4),
  IRanges (>= 2.4.7),
  rtracklayer (>= 1.30.4),
  Ckmeans.1d.dp (>= 4.2.1)
BiocViews: Software
Encoding: UTF-8
LazyData: true
LinkingTo: Rcpp, RcppArmadillo
RoxygenNote: 6.1.0