v1.3.0

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1.3.0 (02-18-2022)

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• Add study_title to --detailed flag (#152 <https://github.com/saketkc/pysradb/issues/152>_)
• Fix KeyError in metadata where some new IDs do not have any metadata (#151 <https://github.com/saketkc/pysradb/issues/151>_)

What's Changed

• Do not exit on no search hits by @saketkc in #149
• Fix typos in README by @mphschmitt in #150

New Contributors

• @mphschmitt made their first contribution in #150

Full Changelog: v1.1.0...v1.3.0

v1.2.0

• Do not exit if a qeury returns no hits (#149)

Full Changelog: v1.1.0...v1.2.0

v1.1.0

What's Changed

• Gsm to gse fix by @DevangThakkar in #128
• Add support for downloading GEO files by @DevangThakkar in #129
• Ena bug by @bscrow in #144
• Pub date by @bscrow in #146

New Contributors

• @DevangThakkar made their first contribution in #128

Full Changelog: v1.0.1...v1.1.0

v1.0.1

• Dropped Python 3.6 since pandas 1.2 is not supported

v1.0.0

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1.0.0 (01-09-2021)

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• Retired metadb and SRAdb based search through CLI - everything defaults to SRAweb
• SRAweb now supports search <https://saket-choudhary.me/pysradb/quickstart.html#search>_
• N/A is now replcaced with pd.NA
• Two new fields in --detailed: instrument_model and instrument_model_desc #75
• Updated documentation

v0.11.1

• library_layout is now outputted in metadata #56
• detailed unifies columns for ENA fastq links instead of appending _x/_y #59
• bugfix for parsing namespace in xml outputs #65
• XML errors from NCBI are now handled more gracefully #69
• Documentation and dependency updates

v0.11.0

• pysradb download now supports multiple threads for paralle downloads
• pysradb download also supports ultra fast downloads of FASTQs from ENA using aspera-client

v0.10.4

• Fixed a bug in detailed mode with multiple SRPs
• Added requirements to MANIFEST

v0.10.3

• Added test cases for SRAweb
• API limit exceeding errors are automagically handled
• Bug fixes for GSE <=> SRR
• Bug fix for metadata - supports multiple SRPs

v0.10.2

• Bug fix: Handle API-rate limit exceeding => Retries
• Enhancement: 'Alternatives' URLs are now part of --detailed