From de06a76439bf12d821f7212568563d86834707e1 Mon Sep 17 00:00:00 2001
From: John Bogovic <bogovicj@janelia.hhmi.org>
Date: Thu, 17 Oct 2024 11:42:23 -0400
Subject: [PATCH] chore: clean up

---
 src/main/java/bdv/gui/ExportDisplacementFieldFrame.java  | 9 ---------
 src/main/java/bigwarp/BigWarp.java                       | 9 +--------
 src/test/java/bigwarp/dfield/DfieldExportTest.java       | 1 -
 .../SimilarityTransformInterpolationExample.java         | 2 --
 4 files changed, 1 insertion(+), 20 deletions(-)

diff --git a/src/main/java/bdv/gui/ExportDisplacementFieldFrame.java b/src/main/java/bdv/gui/ExportDisplacementFieldFrame.java
index 19884f36..e7062f9c 100644
--- a/src/main/java/bdv/gui/ExportDisplacementFieldFrame.java
+++ b/src/main/java/bdv/gui/ExportDisplacementFieldFrame.java
@@ -6,7 +6,6 @@
 import java.awt.GridBagLayout;
 import java.awt.Insets;
 import java.io.File;
-import java.net.URISyntaxException;
 import java.util.Arrays;
 import java.util.function.Consumer;
 import java.util.stream.Collectors;
@@ -29,27 +28,19 @@
 import javax.swing.filechooser.FileFilter;
 import javax.swing.filechooser.FileNameExtensionFilter;
 
-import org.janelia.saalfeldlab.n5.N5URI;
-
 import com.formdev.flatlaf.util.UIScale;
 
-import bdv.export.ProgressWriterConsole;
 import bdv.ij.ApplyBigwarpPlugin;
 import bdv.ij.BigWarpToDeformationFieldPlugIn;
 import bdv.ij.BigWarpToDeformationFieldPlugIn.DeformationFieldExportParameters;
 import bdv.viewer.Source;
 import bigwarp.BigWarp;
 import bigwarp.BigWarpData;
-import bigwarp.BigWarpInit;
 import bigwarp.landmarks.LandmarkTableModel;
 import bigwarp.transforms.BigWarpTransform;
 import ij.IJ;
-import ij.ImagePlus;
 import ij.Macro;
 import ij.plugin.frame.Recorder;
-import mpicbg.spim.data.SpimDataException;
-import net.imglib2.type.NativeType;
-import net.imglib2.type.numeric.RealType;
 
 public class ExportDisplacementFieldFrame extends JFrame
 {
diff --git a/src/main/java/bigwarp/BigWarp.java b/src/main/java/bigwarp/BigWarp.java
index 9247a78b..e952f418 100755
--- a/src/main/java/bigwarp/BigWarp.java
+++ b/src/main/java/bigwarp/BigWarp.java
@@ -39,7 +39,6 @@
 import java.io.FileWriter;
 import java.io.IOException;
 import java.lang.reflect.Field;
-import java.lang.reflect.InvocationTargetException;
 import java.net.URI;
 import java.net.URISyntaxException;
 import java.text.SimpleDateFormat;
@@ -51,9 +50,7 @@
 import java.util.Optional;
 import java.util.Set;
 import java.util.concurrent.CopyOnWriteArrayList;
-import java.util.concurrent.Executors;
 import java.util.concurrent.RejectedExecutionException;
-import java.util.function.Supplier;
 
 import javax.swing.ActionMap;
 import javax.swing.InputMap;
@@ -101,7 +98,6 @@
 import bdv.gui.BigWarpMessageAnimator;
 import bdv.gui.BigWarpViewerFrame;
 import bdv.gui.BigWarpViewerOptions;
-import bdv.gui.BigwarpLandmarkSelectionPanel;
 import bdv.gui.ExportDisplacementFieldFrame;
 import bdv.gui.LandmarkKeyboardProcessor;
 import bdv.gui.MaskOptionsPanel;
@@ -110,7 +106,6 @@
 import bdv.gui.TransformTypeSelectDialog;
 import bdv.ij.ApplyBigwarpPlugin;
 import bdv.ij.ApplyBigwarpPlugin.WriteDestinationOptions;
-import bdv.ij.BigWarpToDeformationFieldPlugIn;
 import bdv.ij.util.ProgressWriterIJ;
 import bdv.img.WarpedSource;
 import bdv.tools.InitializeViewerState;
@@ -145,8 +140,6 @@
 import bdv.viewer.TransformListener;
 import bdv.viewer.ViewerPanel;
 import bdv.viewer.ViewerState;
-import bdv.viewer.ViewerStateChange;
-import bdv.viewer.ViewerStateChangeListener;
 import bdv.viewer.WarpNavigationActions;
 import bdv.viewer.animate.SimilarityModel3D;
 import bdv.viewer.animate.TranslationAnimator;
@@ -177,7 +170,6 @@
 
 import java.util.LinkedHashMap;
 import jitk.spline.ThinPlateR2LogRSplineKernelTransform;
-import jitk.spline.XfmUtils;
 import mpicbg.models.AbstractModel;
 import mpicbg.models.AffineModel2D;
 import mpicbg.models.AffineModel3D;
@@ -232,6 +224,7 @@ public class BigWarp< T >
 	protected BigWarpData< T > data;
 
 	protected final SetupAssignments setupAssignments;
+
 	protected final WarpVisFrame warpVisDialog;
 
 	protected final HelpDialog helpDialog;
diff --git a/src/test/java/bigwarp/dfield/DfieldExportTest.java b/src/test/java/bigwarp/dfield/DfieldExportTest.java
index 90d441ce..712d3fd0 100644
--- a/src/test/java/bigwarp/dfield/DfieldExportTest.java
+++ b/src/test/java/bigwarp/dfield/DfieldExportTest.java
@@ -30,7 +30,6 @@
 import bigwarp.source.SourceInfo;
 import bigwarp.transforms.BigWarpTransform;
 import ij.ImagePlus;
-import net.imglib2.Dimensions;
 import net.imglib2.FinalRealInterval;
 import net.imglib2.RandomAccessibleInterval;
 import net.imglib2.RealInterval;
diff --git a/src/test/java/net/imglib2/realtransform/SimilarityTransformInterpolationExample.java b/src/test/java/net/imglib2/realtransform/SimilarityTransformInterpolationExample.java
index 30cb7949..78d8fcd7 100644
--- a/src/test/java/net/imglib2/realtransform/SimilarityTransformInterpolationExample.java
+++ b/src/test/java/net/imglib2/realtransform/SimilarityTransformInterpolationExample.java
@@ -46,7 +46,6 @@
 import net.imglib2.util.Intervals;
 import net.imglib2.view.Views;
 
-
 public class SimilarityTransformInterpolationExample {
 
 	public static void main(String[] args) {
@@ -58,7 +57,6 @@ public static void main(String[] args) {
 
 	public static void exp() {
 
-		double[] zero = new double[]{0, 0, 0};
 		double[] center = new double[]{252, 76, 70};
 		double[] centerOfRotation = new double[] { 252, 150, 70 };
 		AffineTransform3D offset = new AffineTransform3D();