diff --git a/README.md b/README.md index b0ba885..448794c 100644 --- a/README.md +++ b/README.md @@ -94,6 +94,13 @@ badread simulate --reference ref.fasta --quantity 50x \ | gzip > reads.fastq.gz ``` +To simulate PacBio HiFi reads: +```bash +badread simulate --reference ref.fasta --quantity 50x \ + --error_model pacbio2021 --qscore_model pacbio2021 --identity 30,3 \ + | gzip > reads.fastq.gz +``` + Very bad reads: ```bash badread simulate --reference ref.fasta --quantity 50x --glitches 1000,100,100 \