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chore: update sphinx and related dependencies/config #1573

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merged 4 commits into from
May 22, 2023
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@Shadow53 Shadow53 commented May 8, 2023

Description

Updates sphinx and related dependencies for building documentation.

I had to update some of the configuration just to make sure we stay compatible with newer versions. The theme we use does not yet support Sphinx 7.0.0, so I set it to the latest 6 version.

Checklist

  • The PR targets the master branch
  • The above description motivates these changes.
  • The change is atomic and can be described by a single commit (your PR will be squashed on merge).
  • All changes to code are covered via unit tests.
  • Parameters and return values have type hints with PEP 484 syntax.
  • Functions and classes have useful Sphinx-style docstrings.
  • (New Feature) The docs have been updated accordingly.
  • (Bugfix) The associated issue is referenced above using auto-close keywords.

@Shadow53 Shadow53 added documentation 📝 An issue for improving docs. v4 labels May 8, 2023
@Shadow53 Shadow53 requested a review from a team as a code owner May 8, 2023 19:06
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Is make.bat supposed to be manually executed (by windows)?

@@ -405,3 +130,5 @@ def builder_inited_handler(app):

def setup(app):
app.connect("builder-inited", builder_inited_handler)

# end: fun little hack
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wait, where is the the beginning 😂

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Line 105 says

# fun little hack to always build the rst changelog from the markdown

@Shadow53 Shadow53 force-pushed the v4-update-sphinx branch from 61b7178 to e86f6d6 Compare May 22, 2023 17:47
@Shadow53 Shadow53 merged commit 795d134 into v4 May 22, 2023
@Shadow53 Shadow53 deleted the v4-update-sphinx branch May 22, 2023 17:55
MarquessV added a commit that referenced this pull request Sep 18, 2023
* feat: remove v2 compatibility layer (#1475)

BREAKING CHANGE: Removes the compatilbility.v2 subpackage

* Use Rust SDK from compilation to result collection (#1472)

* Add a LocalCompiler that uses the Rust QCS SDK

* Collect memory descriptors

* quil_to_native_quil takes a quantum processor (not a string ID)

* Num shots no worky

* Return actual program from compilation

* Clean up after Mark

* WIP recalc table and patch values

* use build_patch_values qcs binding

* Fix memory value collection

Collection would overwrite entries when a declared block of memory
had a length > 1. We now append to a growing list, which should
end with a length equal to the declared length in Quil.

* Use qcs-sdk for results

Required a changed to how buffers are interpreted, due to the
change from byte strings to actual lists in the response from the
sdk.

* Start the new migration guide

Just a list of changes for now. Not super comprehensive, but want
to ensure we don't lose track of important changes we should
eventually call out.

* Add qcs-sdk-python to poetry dependencies

* retry checks now that linux wheel is available for qcs_sdk

* retry checks now that linux wheel is available for qcs_sdk

* Rework async

* Pass compiler ISA rather than QCS ISA

* use [email protected]

* fix: Ensure adding programs doesn't mutate the first (#1477)

Closes #1476

As noted in #1476, adding programs (like `p1 + p2`) currently mutates
the first program (i.e. `p1` would change). This PR ensures that
calibrations et. al. are copied rather than just assigned, and adds a
new test case to `unit/test_program.py` to ensure against regression:

```shell
$ poetry run pytest test/unit/test_program.py --verbose
==================================== test session starts =====================================
platform darwin -- Python 3.9.13, pytest-6.2.4, py-1.10.0, pluggy-0.13.1 -- /Users/genos/rc/repos/pyquil/.venv/bin/python
cachedir: .pytest_cache
rootdir: /Users/genos/rc/repos/pyquil
plugins: cov-2.12.1, freezegun-0.4.2, rerunfailures-9.1.1, xdist-2.3.0, mock-3.6.1, timeout-1.4.2, forked-1.3.0
collected 5 items

test/unit/test_program.py::test_measure_qubits PASSED                                  [ 20%]
test/unit/test_program.py::test_parameterized_single_qubit_measurement_basis PASSED    [ 40%]
test/unit/test_program.py::test_parameterized_single_qubit_state_preparation PASSED    [ 60%]
test/unit/test_program.py::test_parameterized_readout_symmetrization PASSED            [ 80%]
test/unit/test_program.py::test_adding_does_not_mutate PASSED                          [100%]
```

* fix: report non-503 http status errors when creating engagements (#1479)

* fix: report non-503 http status errors when creating engagements

* chore: update docs

* chore: prepare release 3.3.1

* chore: poetry update (#1481)

* chore: poetry update

* chore: update respx dependency

* chore: update black and mypy

* chore: update tests to match client changes

* chore: pin numpy dep to fix type issues

* chore: fix lint errors

* chore: remove cast

* chore: instll mypy types

* chore: add types to dependencies

* chore: add type deps to lockfile

* chore: fix tests mocks

* chore: try update sphinx

* chore: revert error tolerance and change language to english

* chore: fix sphinx issues

* chore: revert sphinx update

* chore: relax numpy version and fix type errors

* chore: prepare release 3.3.2

* Fix: response parsing

* Update: support execution against gateway

* Fix incorrect validation

* fixes

* Bump SDK version

* Remove test script

* Bump major version to v4

* Remove debug print

* Update migration guide

* Fix lockfile

* bump qcs-sdk-python version to 0.3.0

* use qcs-sdk 0.3.1

* update test qcs_settings.toml, make it accessible to rust sdk

* share test qcs config between unit and e2e tests, bump scipy, add
asyncio-nest as dev dependency

* add coveralls as dev dep

* attempt at simplifying deps

* nest-asyncio needs to be a dev dep

* test new qcs-sdk-rust fix

* fix types warnings from `make check-types`   (#1482)

* fix: types

* chore: use type-only reference

* chore: mr cleanup

* chore: update qcs-sdk-python version

Co-authored-by: marquessv <[email protected]>

* skip test with extra HALT instruction

Co-authored-by: Mark Skilbeck <[email protected]>
Co-authored-by: marquessv <[email protected]>
Co-authored-by: Graham <[email protected]>
Co-authored-by: jselig-rigetti <[email protected]>
Co-authored-by: notmgsk <[email protected]>

* set release version to rc0

* use the release syntax knope uses

* fix: use properly packaged qcs-sdk types

* get quilc version info from qcs sdk (#1492)

* update qcs-sdk-python and use it to get quilc version

* use backport of AsyncMock for python 3.7

* use MockerFixture instead of monkeypatch

* pass compiler timeout to qcs sdk, set default to 30s (#1498)

* update qcs sdk, pass compiler timeout to it, set default to 30s

* backport of AsyncMock is available in mock >= 4

* track TODO with issue

* Revamp release workflows for v4 (#1500)

* prepare prerelease on push to v4, publish on tagged releases

* remove prerelease workflow, update knope for dry-run workflow

* knope should skip ci, use [package] instead of [[package]]

* env is scoped to task

* poetry builds universal wheel

* simplify workflow using poetry

* bump knope to 0.6.3

* chore: prepare release 4.0.0-rc.2 [skip ci]

* fix: use highest priority Gateway (#1504)

* chore: prepare release 4.0.0-rc.3 [skip ci]

* fix: Remove pyi type annotations causing runtime errors (#1506)

* fix: don't use pyi types in executable code

* fix: ro_sources is a dict

* chore: prepare release 4.0.0-rc.4 [skip ci]

* fix: bump qcs-sdk-python to fix waveforms (#1507)

* chore: prepare release 4.0.0-rc.5 [skip ci]

* ci: update knope to 0.7.0 with version detection fixes (#1526)

* chore: prepare release 4.0.0-rc.6 [skip ci]

* BREAKING CHANGE: remove vestigial engagement manager and qpu client (#1528)

* chore: remove engagement manager and qpu client

* chore: appease linter

* chore: ignore unnecessary type gripes

* chore: linter appeasement

* chore: fix type hints

* chore: revert more type hint changes

* chore: type hits ignore

* chore: type hits ignore

* Update pyquil/api/_qpu.py

Co-authored-by: Kalan <[email protected]>

* chore: extra trailing space

---------

Co-authored-by: Kalan <[email protected]>

* chore: prepare release 4.0.0-rc.7 [skip ci]

* BREAKING CHANGE: Python 3.7 is no longer supported.

* ci: update knope, python in workflows

* run tests on PRs and pushes to v4

* ci: stringify python versions in matrix so 3.10 isn't read as 3.1

* fix: mypy issues

* remove redundant steps from gitlab ci

* ci: migrate coverage job to github

* ci: disable coverage job

* ci: comment formatting

* ci: restore gitlab ci tasks so it succeeds

* ci: remove pypi publish from gitlab-ci

* ci: use poetry for readthedocs

* ci: read readthedocs

* try using poetry virtualenv

* maybe this?

* chore: prepare release 4.0.0-rc.8 [skip ci]

* ci: dont specify pypi manually on publish [skip ci]

* feat!: remove qcs-api-client dependency (#1550)

* fix: refactor to use qcs_sdk

* chore: test and fix test breaks

* chore: update qcs_sdk dependency and support endpoint_id

* chore: fix check style

* chore: ignore failing test

* fix: remove shape arg from np.array call

* chore: update qcs-sdk-python dep

* chore: fix linting

* chore: add pydantic to dependencies

* chore: add pandoc dep

* chore: mr feedback

* chore: try regen lockfile

* chore: update lockfile

* chore: prepare release 4.0.0-rc.9 [skip ci]

* feat!: use qcs-sdk-python implementation of conjugate_pauli_by_clifford and generate_randomized_benchmarking_sequence (#1557)

* feat!: use qcs-sdk-python implementation of conjugate_pauli_by_clifford and generate_randomized_benchmarking_sequence

* fix: benchmark references

* fix: type and import changeS

* chore: fix imports for real for real, for real

* chore: remove unnecessary tests

* chore: remove another unused test

* chore: prepare release 4.0.0-rc.10 [skip ci]

* Catch v4 up with v3 (#1567)

* Merge `master` into `v4`

* update numpy and mypy, resolve type issues

* chore: prepare release 4.0.0-rc.11 [skip ci]

* * fix!: `native_quil_metadata` is now set on a Program after compilation. The `NativeQuilMetadata` class has been replaced with a equivalent from `qcs-sdk-python`. It has the same fields, but is no longer a dataclass. (#1572)

* chore: prepare release 4.0.0-rc.12 [skip ci]

* chore: update sphinx and related dependencies/config (#1573)

* chore: update sphinx and related dependencies/config

* chore: undo adding changes file to index, ensure is not present when building

* chore: fix pandoc command not being valid

* chore: no longer need to delete the changes file

* chore: prepare release 4.0.0-rc.13 [skip ci]

* fix: The default QCSClient will now load without having QCS credentials (#1582)

* chore: prepare release 4.0.0-rc.14 [skip ci]

* fix: native_quil_to_executable will no longer block indefinitely (#1585)

* chore: prepare release 4.0.0-rc.15 [skip ci]

* fix: Parametric DefGates and upper case function call expressions will no longer fail to parse. (#1589)

fix: Parametric DefGates and upper case function call expressions will no longer fail to parse

* chore: prepare release 4.0.0-rc.16 [skip ci]

* fix: Replace `retry`, loosen `networkx` requirements, ensure adding programs don't mutate the first

Catches v3 up with v4

* chore: prepare release 4.0.0-rc.17 [skip ci]

* feat!: The `QuantumComputer`'s `run` method now takes an optional `MemoryMap` parameter. This mapping takes memory region names to a list of values to use for a run. This replaces the need to use `write_memory` on `Program`s between runs.

* chore: prepare release 4.0.0-rc.18 [skip ci]

* feat: support translation options for QPUCompiler (#1590)

* feat: support translation options for QPUCompiler

* chore: prepare release 4.0.0-rc.19 [skip ci]

* fix: Remove calibrations from program before sending them to a QVM (#1592)

* chore: prepare release 4.0.0-rc.20 [skip ci]

* V4: Relax Python version constraint to ^3.8,<4.0 (#1597)

fix: Relax Python version constraint to ^3.8,<4.0

* chore: prepare release 4.0.0-rc.21 [skip ci]

* fix: get_qc will use the given client_configuration

* chore: prepare release 4.0.0-rc.22 [skip ci]

* fix: `copy_everything_but_instructions` now correctly copies `DECLARE` statements (#1600)

* fix: `copy_everything_but_instructions` now correctly copies `DECLARE`
statements.

* fix rewrite_arithmetic

* simplify declaration iteration

Co-authored-by: Michael Bryant <[email protected]>

* add clarifying comment

---------

Co-authored-by: Michael Bryant <[email protected]>

* chore: prepare release 4.0.0-rc.23 [skip ci]

* V4 - fix: Load defaults for ommitted config fields (#1605)

* fix: Partial QCS configs will fallback on defaults for omitted fields

* add options fields to QVM api calls

* correct param name

* ignore call arg err

* style

* consolidate get_version_info_requests

* chore: prepare release 4.0.0-rc.24 [skip ci]

* V4 - fix: `packaging` is now specified as a dependency (#1608)

* fix: `packaging` is now specified as a dependency

* specify as 23.1 or greater

* update poetry.lock

* chore: prepare release 4.0.0-rc.25 [skip ci]

* fix: specify `quil` as a dependency

* chore: prepare release 4.0.0-rc.26 [skip ci]

* feat: increase gRPC message size limit (#1610)

* chore: prepare release 4.0.0-rc.27 [skip ci]

* fix:`Program.copy_everything_except_instructions()` no longer adds declarations to the instructions property (#1612)

* Reverse RC23 change set (code only, not the test).

* Fix: Program.declarations is a view on Program.instructions and should not be copied.

This alternate solution makes the test that was developed for #1596 pass, where previously it failed. This should resolve both #1596 and #1611.

* Fix: the shallow copy() method needs to copy the declarations

* chore: prepare release 4.0.0-rc.28 [skip ci]

* feat!: Use `ExecutionOptions` parameter to configure how jobs are submitted and retrieved from a QPU. This replaces the `use_gateway` flag on `QCSClient.load()` has been removed. (#1598)

* chore: prepare release 4.0.0-rc.29 [skip ci]

* feat: re-export ExecutionOptionsBuilder and ConnectionStrategy from
pyquil.api

* chore: prepare release 4.0.0-rc.30 [skip ci]

* fix: Initializing a QPU with an `endpoint_id` should no longer raise an exception

* merge master

* re-remove QPU client and engagement mananger

* resolve other issues with merge

* more unused type ignores

* chore: prepare release 4.0.0-rc.31 [skip ci]

* ci: Rework code coverage and re-enable in ci (#1619)

* ci: Add coverage step

* prefix action version with v

* update README.md

* overall coverage shouldn't go down

* chore: prepare release 4.0.0-rc.32 [skip ci]

* chore: Start v4.0.0 changelog entry, add V4_PRERELEASE_CHANGELOG (#1622)

* Start v4.0.0 changelog entry, add V4_PRERELEASE_CHANGELOG

* update issue link

* gRPC casing

Co-authored-by: jselig-rigetti <[email protected]>

* Remove extra .

Co-authored-by: jselig-rigetti <[email protected]>

---------

Co-authored-by: jselig-rigetti <[email protected]>

* chore: prepare release 4.0.0-rc.33 [skip ci]

* add pyquil v4 introduction

* chore: prepare release 4.0.0-rc.34 [skip ci]

* build: add introducing_v4 doc

* chore: prepare release 4.0.0-rc.35 [skip ci]

* docs: update gateway documentation link

* chore: prepare release 4.0.0-rc.36 [skip ci]

* fix: The timeout parameter on the `QPU` class is now respected. The default has been increased to 30.0 seconds (#1615)

* use execution_options to configure timeout

* correct types

* bump qcs-sdk-python

* fix types

* update docstring

* add tests

* shorten line length

* tweak coverage check settings

* chore: prepare release 4.0.0-rc.37 [skip ci]

* fix: Getting a QuantumComputer based on a generic QVM will no longer hang if quilc isn't running (#1624)

fix: Getting a QVM based QuantumComputer will no longer hang if quilc is not running

* chore: prepare release 4.0.0-rc.38 [skip ci]

* doc: Add doctests (#1574)

* chore: enable doctests, edit one doc file to use doctests

* test: make advanced_usage.rst into doctests

* test: make compiler.rst into doctests

* test: make exercises.rst into doctests

* test: make remaining rst files into doctests

* test: make pytest run doctests on api docs

* doc: apply suggestions from self code review

* doc: fix docs formatting

* ci: add doctest step to CI

* chore: mention 'make doctest' in CONTRIBUTING.md

* chore: add link to issue

* chore: update dependencies

* doc: metadata are now properties, not dictionary keys

* fix: fix type hint

* test: disable test requiring QCS API access

* ci: install pandoc for doctests

* test: disable test requiring QCS API access

* test: disable tests requiring QCS API access

* fix: fall back to defaults when creating a QCSClient fails

* uncomment native_quil_metadata print

* remove redundant client load in _wavefunction_simulator

* set protoquil flag

* feedback

---------

Co-authored-by: marquessv <[email protected]>

* chore: prepare release 4.0.0-rc.39 [skip ci]

* V4 - feat: A new `diagnostics` module has been added. (#1628)

* feat: A new `diagnostics` module has been added. The `get_report`
function can be used to get a gather and report on various diaganostics.

* fix testoutput annotation

* add test

* Add `PRAGMA DELAY ...` breaking change

* bump qcs-sdk-python

* chore: prepare release 4.0.0-rc.40 [skip ci]

* doc: Revamp installation and getting started documentation (#1627)

---------

Co-authored-by: Michael Bryant <[email protected]>

* chore: prepare release 4.0.0-rc.41 [skip ci]

* doc: Revamp "Programs and gates" documentation (#1632)

doc: Revamp "Programs and gates" section

* chore: prepare release 4.0.0-rc.42 [skip ci]

* feat: release docker images using github ci, not gitlab (#1636)

* feat: release using github ci

* chore: base on pyquil version, not repository tag

* fix: use correct output setup and fully tested

* fix: rc vs latest branch pushing from env vars not tag formatters

* chore: add testing dockerfile

* chore: prepare release 4.0.0-rc.43 [skip ci]

* feat: `QAMExecutionResult` now has a `raw_readout_data` property (#1631)

* feat: add raw_readout_data to QAMExecutionResult

* refactor!: use ExecutionData in QAMExecutionResult

* update wrappers around result data, fix tests

* cleanup

* update changelog

* clean up style checks

* a few more cleanups

* add tests

* use new asdict method

* update return type

* accomodate latest changes + docs entry

* clarity around qubit re-use

Co-authored-by: Kalan <[email protected]>

* clarify docs, method names, and update tests

* more verbose handling of duration

* docstrings/mypy

* Update docs/source/introducing_v4.rst

Co-authored-by: Kalan <[email protected]>

* use total_seconds() method to calculate total microseconds

* update qcs-sdk-python

---------

Co-authored-by: Michael Bryant <[email protected]>
Co-authored-by: Kalan <[email protected]>

* chore: prepare release 4.0.0-rc.44 [skip ci]

* feat!: Program and Instruction APIs are backed by quil-rs (#1639)

* Foundational support for implementing Program with qcs-sdk-python (#1518)

* tear out members, start replacing with rust API (WIP)

* first pass as integrating with qcs_sdk.quil

* fix low hanging fruit, introduce snapshot testing for passing tests,
annotate others with improvements that need to be made

* update poetry.lock

* more test annotations, fixes, snapshots

* deprecation warnings and cleanup

* Gate tests and snapshots, pre-replacement with quil-rs

* add test for FORKED gate

* back Gate with RSGate

* fix deprecated notice

* test improvements

* more cleanup

* various cleanups

* add more snaps

* clean up program per feedback

* feat!: The `calibrations` method on `Program` now only returns `DefCalibration`s. A `Program`s the `DefMeasureCalibrations` can be retrieved via the new `measure_calibrations` method.

* update instruction handling logic

* deprecate valid protoquil/quilt methods

* add compatibility layer by overriding quil_rs.Gate superclass methods

* remove gate __init__ method

* remove old comments

* revert defcal changes

* safer type checking on conversion methods

* simplify ParameterDesignator Type

* forbidden metaclass shenanigans

* Update pyquil/quil.py

Co-authored-by: Kalan <[email protected]>

* use deprecated decorator

* update qcs-sdk-python dependency spec

---------

Co-authored-by: Kalan <[email protected]>

* V4 Setters for the Gate class (#1535)

* add and test setters

* use simple enum syntax

* Use quil_rs for Calibrations (#1536)

* setup test suite for DefCalibration

* back DefCalibration with quil_rs.Calibration

* fix metaclass implementation so all instruction types aren't recognized
as the same

* back DefCalibration with quil_rs.Calibration

* setup DefMeasureCalibration tests

* back DefMeasureCalibration with quil_rs.MeasureCalibrationDefinition

* gate calibrations with quil_rs

* more efficient handling of calibrations

* setup Measurement tests

* back Measurement with quil_rs

* use calibration set api for calibrations

* BREAKING CHANGE: DefMeasureCalibration now requires a MemoryReference

* update tests

* cleanup stale todos, match calibration logic

* type hints for tests

* remove redundant guard in match_calibrations

Co-authored-by: Kalan <[email protected]>

---------

Co-authored-by: Kalan <[email protected]>

* Re-write `get_classical_addresses_from_quil_program` to use `quil-rs` (#1541)

* BREAKING CHANGE: DefFrame and Frame are no longer dataclasses

We've removed the @DataClass decorator from `DefFrame` and `Frame`. `Frame`s properties can now be edited. Most functionality should have been re-implemented, but breakages may be possible, depending on how much of the @DataClass functionality was being leveraged.

* Use quil-rs FrameSet API and compatibility layer (#1543)

* setup Frame and DefFrame test suites

* add eq test

* back Frame with quil_rs FrameDefinition

* back DefFrame with quil_rs.FrameDefinition

* fix flaky DefFrame snapshot tests

* cleanup imports

* "unfreeze" Frame properties

* use FrameSet API and compatibility layer, with tests

* update calibrations property as well

* center_frequency -> CENTER-FREQUENCY

* fix attribute names in DefFrame

* update snapshot

* BREAKING CHANGE: Setting the offsets property on `Declare` will raise a `ValueError` if no shared_region is set.

* setup tests for Declare

* BREAKING CHANGE: Setting the offsets property on ``Declare`` will raise
if no shared_region is set.

* update tests

* add note

* trust truthy/falsy values

* BREAKING CHANGE: A `Program` that uses qubit or label placeholders cannot be pickled

* V4 Program API: Back GateDef with GateDefinition (#1549)

* setup DefGate test suite

* add baseline tests for permutation and pauli gates

* compatibility for paulis, expressions, back DefGate with GateDefinition

* back DefPermutationGate with quil-rs

* back DefGateByPaulis w/ quil-rs

* better support Expressions

* dont try to support Expressions

* cleanup

* update tests

* combine int, float, and complex conversion

* feat: Add DefCircuit

* setup DefWaveform tests

* back DefWaveform with quil-rs

* update snapshot

* clean up redudnant import

* implement DefCircuit using quil-rs

* add DefCircuit|Waveform to py instruction conversion method

* update snapshot after instruction indentation fix

* V4 Instruction API: Pragma, Reset, Fence, Delay (#1551)

* setup Pragma tests

* setup tests for Qubit

* setup tests for Fence

* back Pragma with quil_rs.Pragma

* back Reset, ResetQubit, with quil-rs

* Back Delay(Frames|Qubits) with quil-rs

* update Delay implementation per feedback

* back Fence, FenceAll, with quil-rs

* remove unused snapshots, prints

* update convers to rs/py instruction functions

* better type for numpy numbers

* cleanup, and assert ResetQubit qubit is not None

* BREAKING CHANGE: The `pop` method has been removed from `Program`

* remove to_headers

* BREAKING CHANGE: The `pop` method has been removed from `Program`

* remove to_headers arg

* * BREAKING CHANGE: `TemplateWaveform` and its subclasses are no longer dataclasses. Most important functionality has been replaced so this change should be transparent for most use cases.

* setup tests for Capture

* setup tests for Pulse

* create tests for RawCapture

* add tests for template waveforms

* add compatibility layer for TemplateWaveforms

* back Capture with quil_rs

* back Pulse with quil_rs

* back RawCapture with quil_rs

* BREAKING CHANGE: `TemplateWaveform` and its subclasses are no longer
dataclasses. Most important functionality has been replaced so this
change should be transparent for most use cases.

* deprecation warning for TemplateWaveform and its subclasses, direct to
new WaveformInvocation class

* BREAKING CHANGE: SwapPhase has been renamed to SwapPhases

* setup up tests for set/shift instructions

* setup tests for SwapPhase

* back frame mutation instructions with quil-rs

* back SwapPhase with quil-rs

* formatting

* BREAKING CHANGE: SwapPhase has been renamed to SwapPhases

* V4: Deprecate format parameter (#1566)

* update mypy, fix various lints, deprecate format_parameter

* returns variable length tuple

* a few more lints

* more lints

* cant isinstance check with generics

* V4: The rest of the non control-flow instructions (#1568)

* ClassicalConvert tests

* tests for Classical(Exchange|Load|Move)

* ClassicalStore tests

* test ClassicalComparison classes

* test UnaryClassicalInstructions

* Include implementation and test

* Wait, Halt, Nop test and implementation

* implement ClassicalConvert

* re-implement ClassicalLoad

* re-implement ClassicalStore

* re-implement ClassicalComparison

* re-implement Exchange

* re-implement ClassicalUnary

* back ClassicalMove, ClassicalExchange with quil-rs

* fix recursive implementation of SimpleInstruction.__str__

* fix!: The `get_qubits` method on a `Gate` now returns a list so that
ordering is always guaranteed.

* update snapshots for test_main

* add test annotations for test_noise.py

* account for integer qubit in pragma arguments

* Instruction API for BinaryOperations

* update noise tests

* resolve issues in test_quil.py, or update todo annotation

* update rewrite_arithmetic

* fix parser tests

* annotate test_paulis_with_placeholders

* update test_quantum_computer

* annotate/fix test_quilt.py

* update snapshots

* BREAKING CHANGE: fill_placeholders has been removed as it is no longer
used to expand calibrations

* bump quil version

* fix some tests

* chore! Remove `parser` module (#1618)

* chore!: Remove `parser` module. A `Program` can instead be constructed from a
Quil program string directly. The full list of `AbstractInstruction`s is
available on the `instructions` property.

* fix flaky test

* add parantheses to assertion

* V4 Program API: De-dupe definitions when adding instructions to a Program (#1625)

* wip - de-dupe based on abstract instruction

* normalize incoming instructions ot quil-rs types

* a lil more cleanup

* update docstrings

* bump qcs-sdk-python/quil

* V4 Program API - Placeholders and Control Flow (#1633)

* use to_quil() in out() methods

* simplify inst

* fix test_quilbase tests

* fix other failing tests

* make instructions consistent with v3 implementation

* back Label with quil_rs

* back LabelPlaceholder with quil_rs

* back QubitPlaceholders with quil_rs

* fix off by 1 in test

* checkpoint: update/fix many tests

* checkpoint: all tests passing!

* use renamed method

* some mypy fixes

* replace deprecation with deprecated

* import sphinx decorator

* fix mypy lints and dangling todos

* get docs building

* fix doctests

* update doctests

* simplify pauli from_list

* instrucion->instruction

* use body_instructions property

* update a few old references to instructions

* one more

* add resolve_placeholders_with_custom_resolvers method

* various small fixes

* Remove support for QubitPlaceholders as Pragma arguments

* fix typo

Co-authored-by: Kalan <[email protected]>

* Update CHANGELOG.md

Co-authored-by: Kalan <[email protected]>

* Update CHANGELOG.md

Co-authored-by: Kalan <[email protected]>

* Update CHANGELOG.md

Co-authored-by: Kalan <[email protected]>

* Update CHANGELOG.md

Co-authored-by: Kalan <[email protected]>

* remove duplicate entry

* ignore sphinx warnings

* grammar

* update qcs-sdk-python

---------

Co-authored-by: Kalan <[email protected]>

* satisfy lints

* impl repr

* type hint capitalization

* add HALT back in

* update dev dependencies, quiet down internal depreaction warnings in
test suite

* update CHANGELOG

* more changelog tweaks

* explicitly specify `toml` as a dev dependency

---------

Co-authored-by: Kalan <[email protected]>

* chore: prepare release 4.0.0-rc.45 [skip ci]

* Fix: broken action (#1641)

fix: cannot use env context in env action block

* chore: prepare release 4.0.0-rc.46 [skip ci]

* Fix: broken action pt 2 (vars is not env context) (#1642)

Fix: use vars context, not env context

* chore: prepare release 4.0.0-rc.47 [skip ci]

* fix: Improve readout_data deprecation warning

* fix: Improve readout_data deprecation warning

* chore: prepare release 4.0.0-rc.48 [skip ci]

* docs: fix docs config

* chore: prepare release 4.0.0-rc.49 [skip ci]

* doc: update method reference

* chore: prepare release 4.0.0-rc.50 [skip ci]

* chore: prepare release 3.5.5-rc.0 [skip ci]

* Revert "chore: prepare release 3.5.5-rc.0 [skip ci]"

This reverts commit 9697035.

* doc: add changelog entry for calibrations properties

* chore: prepare release 3.5.5-rc.0 [skip ci]

* Revert "chore: prepare release 3.5.5-rc.0 [skip ci]"

This reverts commit 5f0538c.

* docs!: Revamp the QuantumComputer and the WavefunctionSimulator sections. (#1643)

* chore: prepare release 4.0.0-rc.51 [skip ci]

* fix: Program#calibrate now returns the original instruction if there was no match (#1646)

fix: Program#calibrate returns the input instruction if there was no
match

* chore: prepare release 4.0.0-rc.52 [skip ci]

* feat: Implement `__iadd__` on `Program` (#1648)

feat: Implement __iadd__ on Program

* chore: prepare release 4.0.0-rc.53 [skip ci]

* feat: Quilc clients support (#1638)

* new: Quilc client support

This is to support the (future) introduction of alternative quilc/qvm clients
(i.e. "libquil").

* chore: prepare release 4.0.0-rc.54 [skip ci]

* fix: Attempt to reconstruct `TemplateWaveform`s from `quil_rs.WaveformInvocation`s (#1650)

* chore: prepare release 4.0.0-rc.55 [skip ci]

* fix: Return `FenceAll` when appropriate, `TemplateWaveform`s should no longer raise `ValueError`s when being constructed from certain `quil` instructions.  (#1654)

* chore: prepare release 4.0.0-rc.56 [skip ci]

* chore: prepare release 3.5.5-rc.1 [skip ci]

* build: fix mypy lint, doctest

* chore: prepare release 3.5.5-rc.2 [skip ci]

* fix!: merging master reset version

* chore: prepare release 4.0.0-rc.57 [skip ci]

* test: simplify array expectation

* chore: prepare release 4.0.0-rc.58 [skip ci]

* feat: Update `qcs-sdk-python`, add `transpile_qasm_2` method to `AbstractCompiler`. (#1655)

* chore: prepare release 4.0.0-rc.59 [skip ci]

* docs: Update remaining documentation (#1652)

* chore: prepare release 4.0.0-rc.60 [skip ci]

* update workflows

* remove rc changelog, pre-release note

* add option to do full release, enable dry run

* change dry-run event type

* redundant to run dry run on push

* bump knope to 0.11.0

* update knope-dev/action

* V4 - fix: Handle `quil` FunctionCallExpressions (#1660)

fix: Handle quil_rs FunctionCallExpressions

* chore: prepare release 4.0.0-rc.61 [skip ci]

* feat: cache program properties (#1661)

* chore: prepare release 4.0.0-rc.62 [skip ci]

* fix: update quil

* chore: prepare release 4.0.0-rc.63 [skip ci]

---------

Co-authored-by: Mark Skilbeck <[email protected]>
Co-authored-by: Randall Fulton <[email protected]>
Co-authored-by: Graham <[email protected]>
Co-authored-by: jselig-rigetti <[email protected]>
Co-authored-by: notmgsk <[email protected]>
Co-authored-by: MarquessV <[email protected]>
Co-authored-by: randall-fulton <[email protected]>
Co-authored-by: Michael Bryant <[email protected]>
Co-authored-by: Shadow53 <[email protected]>
Co-authored-by: Kalan <[email protected]>
Co-authored-by: jselig-rigetti <[email protected]>
Co-authored-by: kalzoo <[email protected]>
Co-authored-by: Mark Hodson <[email protected]>
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