HISTORY.txt

# File: HISTORY.txt
#
11-Mar-2020 - V0.11 Created module with preliminary dependency cache management
25-Mar-2020 - V0.12 Turn off framing border
27-Mar-2020 - V0.13 Adjust bond stereo depiction for undefined cases.
 2-Apr-2020 - V0.14 Update dependencies
16-Apr-2020 - V0.15 Adjust bond width with molecule size in 2D depictions
16-May-2020 - V0.16 Add ChemCompFileWorkflow()
10-Jun-2020 - V0.17 Add ChemCompSearchIndexWorkflow()
21-Oct-2020 - V0.18 Add options for files based on model coordinate in ChemCompFileWorkflow()
21-Oct-2020 - V0.19 Update file naming conventions
 8-Jun-2021 - V0.20 Preliminary version of ProteinTargetSequenceWorkflow() and tests, update dependencies
14-Jun-2021 - V0.21 Adding create database, search database and preliminary build features workflows in ProteinTargetSequenceWorkflow()
20-Jun-2021 - V0.22 Adding activity and cofactor workflows in ProteinTargetSequenceWorkflow()
22-Jun-2021 - V0.23 Aligning cofactor content model across data sources
29-Jun-2021 - V0.24 Adding additional selection filters for neighbor interactions, setup abbreviate tests disabling taxonomy processing
29-Jun-2021 - V0.25 Update dependencies and install procedures
 2-Jul-2021 - V0.26 Add support for CARD taxonomy filtering
12-Jul-2021 - V0.27 Add activity reload after restore operation ChEMBLTargetActivityProvider()
12-Jul-2021 - V0.28 Add IMGT feature production to the target workflow
28-Jul-2021 - V0.29 Adding support for StashableBase backup and restore operations
29-Jul-2021 - V0.30 Cache taxonomy data at the beginning of the ProteinTargetSequenceWorkflow, force rebuild of DrugBankProvider()
29-Jul-2021 - V0.31 Broaden cache policy for cofactor providers.
26-Aug-2021 - V0.32 Update dependencies
27-Jun-2022 - V0.33 Change the molBuildType value from "model-xyz" to "connection-table" in ChemCompImageWorkflow()
 9-Jan-2023 - V0.34 Configuration changes to support tox 4
 3-Mar-2023 - V0.35 Standardize args in ProteinTargetSequenceExecutionWorkflow
14-Mar-2023 - V0.36 Generate CARD annotations instead of features during ProteinTargetSequenceExecutionWorkflow
21-Mar-2023 - V0.37 Allow backing up Pharos-targets to stash
 5-May-2023 - V0.38 Add fromDbPharos and reloadPharos parameters to ProteinTargetSequenceExecutionWorkflow.exportFasta()
22-May-2023 - V0.39 Add retries to tox task for MMseqs2 download
 1-Jun-2023 - V0.40 Don't back up resources to GitHub during cache update workflows
12-Jun-2023 - V0.41 Set useTaxonomy filter to False for CARD annotations
19-Sep-2023 - V0.42 Don't overwrite Buildlocker files if there is no data;
                    Reduce resource footprint for Azure tests;
                    Make CARDTargetOntologyProvider stashable on Buildlocker
21-May-2024 - V0.43 Fix pylinting
20-Aug-2024 - V0.44 Add step for loading target cofactor data to MongoDB
27-Aug-2024 - V0.45 Update usage of CARDTargetOntologyProvider
22-Oct-2024 - V0.46 Update requirements and CI/CD (to use python 3.10)
10-Dec-2024 - V0.47 Add support for 'max-seqs' flag in mmseqs database search;
                    Update Azure pipelines to run on latest macOS and ubuntu version
28-Jan-2025 - V0.48 Adding images workflow functionality including cli utility
29-Jan-2025 - V0.49 Adding ExDB(workflow, exec, and tests) and Dockerfile to stop circular imports from rcsb.exdb
13-Feb-2025 - V0.50 Update Dockerfile and requirements;
                    Remove IMGT from feature building after service became unavailable February 2025
19-Feb-2025 - V0.51 Bring back IMGT