From 1a5d0a79daf9917286d0281f3c9e35482e49978a Mon Sep 17 00:00:00 2001 From: Carson Date: Tue, 21 Nov 2023 19:35:38 -0600 Subject: [PATCH] New revdep results --- revdep/README.md | 19 +-- revdep/cran.md | 12 +- revdep/failures.md | 409 ++------------------------------------------- revdep/problems.md | 42 +---- 4 files changed, 16 insertions(+), 466 deletions(-) diff --git a/revdep/README.md b/revdep/README.md index 6a20bf92..bd1e7280 100644 --- a/revdep/README.md +++ b/revdep/README.md @@ -1,6 +1,6 @@ # Revdeps -## Failed to check (39) +## Failed to check (28) |package |version |error |warning |note | |:--------------------|:-------|:-----|:-------|:----| @@ -32,21 +32,4 @@ |omicsViewer |? | | | | |palmid |? | | | | |parcats |? | | | | -|phenomis |? | | | | -|piano |? | | | | -|Prostar |? | | | | -|scanMiRApp |? | | | | -|spatialHeatmap |? | | | | -|sRACIPE |? | | | | -|systemPipeR |? | | | | -|timescape |? | | | | -|TnT |? | | | | -|trackViewer |? | | | | -|ViSEAGO |? | | | | - -## New problems (1) - -|package |version |error |warning |note | -|:------------|:-------|:------|:-------|:----| -|[canvasXpress](problems.md#canvasxpress)|1.46.9 |__+1__ | | | diff --git a/revdep/cran.md b/revdep/cran.md index 1ef6a998..713462a3 100644 --- a/revdep/cran.md +++ b/revdep/cran.md @@ -1,15 +1,7 @@ ## revdepcheck results -We checked 322 reverse dependencies (283 from CRAN + 39 from Bioconductor), comparing R CMD check results across CRAN and dev versions of this package. +We checked 312 reverse dependencies (284 from CRAN + 28 from Bioconductor), comparing R CMD check results across CRAN and dev versions of this package. - * We saw 1 new problems + * We saw 0 new problems * We failed to check 0 packages -Issues with CRAN packages are summarised below. - -### New problems -(This reports the first line of each new failure) - -* canvasXpress - checking tests ... ERROR - diff --git a/revdep/failures.md b/revdep/failures.md index e6d67a2a..f5f6d40b 100644 --- a/revdep/failures.md +++ b/revdep/failures.md @@ -5,7 +5,7 @@ * Version: NA * GitHub: NA * Source code: https://github.com/cran/bigPint -* Number of recursive dependencies: 173 +* Number of recursive dependencies: 177 Run `revdepcheck::cloud_details(, "bigPint")` for more info @@ -40,7 +40,7 @@ Run `revdepcheck::cloud_details(, "bigPint")` for more info * Version: NA * GitHub: NA * Source code: https://github.com/cran/bioCancer -* Number of recursive dependencies: 221 +* Number of recursive dependencies: 224 Run `revdepcheck::cloud_details(, "bioCancer")` for more info @@ -75,7 +75,7 @@ Run `revdepcheck::cloud_details(, "bioCancer")` for more info * Version: NA * GitHub: NA * Source code: https://github.com/cran/BiocPkgTools -* Number of recursive dependencies: 161 +* Number of recursive dependencies: 164 Run `revdepcheck::cloud_details(, "BiocPkgTools")` for more info @@ -145,7 +145,7 @@ Run `revdepcheck::cloud_details(, "cellscape")` for more info * Version: NA * GitHub: NA * Source code: https://github.com/cran/COTAN -* Number of recursive dependencies: 196 +* Number of recursive dependencies: 272 Run `revdepcheck::cloud_details(, "COTAN")` for more info @@ -215,7 +215,7 @@ Run `revdepcheck::cloud_details(, "EBImage")` for more info * Version: NA * GitHub: NA * Source code: https://github.com/cran/EGSEA -* Number of recursive dependencies: 196 +* Number of recursive dependencies: 200 Run `revdepcheck::cloud_details(, "EGSEA")` for more info @@ -250,7 +250,7 @@ Run `revdepcheck::cloud_details(, "EGSEA")` for more info * Version: NA * GitHub: NA * Source code: https://github.com/cran/EpiCompare -* Number of recursive dependencies: 233 +* Number of recursive dependencies: 234 Run `revdepcheck::cloud_details(, "EpiCompare")` for more info @@ -355,7 +355,7 @@ Run `revdepcheck::cloud_details(, "GeneNetworkBuilder")` for more info * Version: NA * GitHub: NA * Source code: https://github.com/cran/Glimma -* Number of recursive dependencies: 198 +* Number of recursive dependencies: 199 Run `revdepcheck::cloud_details(, "Glimma")` for more info @@ -530,7 +530,7 @@ Run `revdepcheck::cloud_details(, "InterCellar")` for more info * Version: NA * GitHub: NA * Source code: https://github.com/cran/LACE -* Number of recursive dependencies: 151 +* Number of recursive dependencies: 169 Run `revdepcheck::cloud_details(, "LACE")` for more info @@ -670,7 +670,7 @@ Run `revdepcheck::cloud_details(, "mapscape")` for more info * Version: NA * GitHub: NA * Source code: https://github.com/cran/MatrixQCvis -* Number of recursive dependencies: 163 +* Number of recursive dependencies: 185 Run `revdepcheck::cloud_details(, "MatrixQCvis")` for more info @@ -810,7 +810,7 @@ Run `revdepcheck::cloud_details(, "modchart")` for more info * Version: NA * GitHub: NA * Source code: https://github.com/cran/motifStack -* Number of recursive dependencies: 143 +* Number of recursive dependencies: 147 Run `revdepcheck::cloud_details(, "motifStack")` for more info @@ -845,7 +845,7 @@ Run `revdepcheck::cloud_details(, "motifStack")` for more info * Version: NA * GitHub: NA * Source code: https://github.com/cran/octad -* Number of recursive dependencies: 177 +* Number of recursive dependencies: 180 Run `revdepcheck::cloud_details(, "octad")` for more info @@ -880,7 +880,7 @@ Run `revdepcheck::cloud_details(, "octad")` for more info * Version: NA * GitHub: NA * Source code: https://github.com/cran/omicsViewer -* Number of recursive dependencies: 184 +* Number of recursive dependencies: 191 Run `revdepcheck::cloud_details(, "omicsViewer")` for more info @@ -977,389 +977,4 @@ Run `revdepcheck::cloud_details(, "parcats")` for more info -``` -# phenomis - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/phenomis -* Number of recursive dependencies: 165 - -Run `revdepcheck::cloud_details(, "phenomis")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# piano - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/piano -* Number of recursive dependencies: 146 - -Run `revdepcheck::cloud_details(, "piano")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# Prostar - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/Prostar -* Number of recursive dependencies: 168 - -Run `revdepcheck::cloud_details(, "Prostar")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# scanMiRApp - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/scanMiRApp -* Number of recursive dependencies: 174 - -Run `revdepcheck::cloud_details(, "scanMiRApp")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# spatialHeatmap - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/spatialHeatmap -* Number of recursive dependencies: 247 - -Run `revdepcheck::cloud_details(, "spatialHeatmap")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# sRACIPE - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/sRACIPE -* Number of recursive dependencies: 101 - -Run `revdepcheck::cloud_details(, "sRACIPE")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# systemPipeR - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/systemPipeR -* Number of recursive dependencies: 171 - -Run `revdepcheck::cloud_details(, "systemPipeR")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# timescape - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/timescape -* Number of recursive dependencies: 42 - -Run `revdepcheck::cloud_details(, "timescape")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# TnT - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/TnT -* Number of recursive dependencies: 125 - -Run `revdepcheck::cloud_details(, "TnT")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# trackViewer - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/trackViewer -* Number of recursive dependencies: 183 - -Run `revdepcheck::cloud_details(, "trackViewer")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# ViSEAGO - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/ViSEAGO -* Number of recursive dependencies: 166 - -Run `revdepcheck::cloud_details(, "ViSEAGO")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - ``` diff --git a/revdep/problems.md b/revdep/problems.md index 70d45cd4..9a207363 100644 --- a/revdep/problems.md +++ b/revdep/problems.md @@ -1,41 +1 @@ -# canvasXpress - -
- -* Version: 1.46.9 -* GitHub: https://github.com/neuhausi/canvasXpress -* Source code: https://github.com/cran/canvasXpress -* Date/Publication: 2023-11-03 20:30:05 UTC -* Number of recursive dependencies: 101 - -Run `revdepcheck::cloud_details(, "canvasXpress")` for more info - -
- -## Newly broken - -* checking tests ... ERROR - ``` - Running ‘testthat.R’ - Running the tests in ‘tests/testthat.R’ failed. - Complete output: - > library(testthat) - > library(canvasXpress) - > require(canvasXpress.data) - Loading required package: canvasXpress.data - > - > test_check("canvasXpress") - Loading required package: htmlwidgets - ... - x[1]: "
" - y[1]: "
" - - [ FAIL 1 | WARN 0 | SKIP 456 | PASS 44 ] - Error: Test failures - Execution halted - ``` - +*Wow, no problems at all. :)* \ No newline at end of file