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rajeejarajeeja
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some journal files history
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‎misun_protein_mesh/cubit01.jou

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## /Applications/Cubit.app/Contents/MacOS/cubitx
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## Cubit Version 15.0
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## Cubit Build 401220
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## Revised 2015-10-29 13:04:49 -0600 (Thu, 29 Oct 2015)
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## Running 02/06/2017 07:27:40 PM
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## Command Options:
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undo on
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import stl "/Users/rajeevjain/try_git/misun_protein_mesh/misun_protein_mesh.stl" merge
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mesh volume all
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delete mesh volume all propagate
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surface all scheme trimesh
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mesh surface all
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undo group begin
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set attribute off
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export acis "/Users/rajeevjain/try_git/misun_protein_mesh/pm_acis.sat" overwrite
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undo group end
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undo group begin
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set attribute off
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export step "/Users/rajeevjain/try_git/misun_protein_mesh/pm_stp.stp" overwrite
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undo group end
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list model info
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mesh surface all
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set developer commands on
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webcut volume 1 with plane xplane offset 0 noimprint nomerge
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mesh surface all
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merge volume all
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merge surface all
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mesh volume all
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delete mesh volume all propagate
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merge volume all
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webcut volume all with plane yplane offset -5.25
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merge volume all
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mesh surface all
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mesh volume all
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mesh volume 1
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delete mesh volume all propagate
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volume all scheme tetmesh
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mesh volume all
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thex volume all
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undo group begin
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volume all smooth scheme mean ratio cpu 1
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smooth volume all
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undo group end
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undo group begin
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volume all smooth scheme smart laplacian
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smooth volume all
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undo group end
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undo group begin
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volume all smooth scheme laplacian
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smooth volume all
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undo group end
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undo group begin
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volume all smooth scheme equipotential
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smooth volume all
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undo group end
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delete mesh volume all propagate
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volume all scheme tetmesh
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mesh volume all
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undo group begin
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cleanup volume all
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remesh volume all
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undo group end
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thex volume all
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export mesh "protein_tet_hex.exo"
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block 1 volume all
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block 1 element type HEX27
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export mesh "protein_tet_hex.exo" overwrite
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delete mesh volume all propagate
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mesh volume all
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delete mesh volume all propagate
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curve all size 0.5
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mesh volume all
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thex volume all
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list block 1
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merge volume all
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list model info
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save as "protein_tet_hex_coarse.cub"
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reset
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open "protein_tet_hex_coarse.cub"
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export mesh "protein_tet_hex_coarse.exo" overwrite
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block 1 volume all
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block 1 element type HEX27
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export mesh "protein_tet_hex_coarse.exo" overwrite
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reset
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import mesh geometry "protein_tet_hex_coarse.exo"
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undo group begin
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volume all smooth scheme condition number beta 2 cpu 2
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smooth volume all
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undo group end
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undo group begin
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volume all smooth scheme mean ratio cpu 2
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smooth volume all
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undo group end

‎misun_protein_mesh/cubit02.jou

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## /Applications/Cubit.app/Contents/MacOS/cubitx
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## Cubit Version 15.0
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## Cubit Build 401220
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## Revised 2015-10-29 13:04:49 -0600 (Thu, 29 Oct 2015)
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## Running 02/09/2017 04:29:37 PM
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## Command Options:
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undo on
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cd
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open "/Users/rajeevjain/try_git/misun_protein_mesh/protein_tet_hex_coarse.cub"

‎misun_protein_mesh/cubit03.jou

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## /Applications/Cubit.app/Contents/MacOS/cubitx
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## Cubit Version 15.0
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## Cubit Build 401220
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## Revised 2015-10-29 13:04:49 -0600 (Thu, 29 Oct 2015)
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## Running 02/09/2017 05:05:30 PM
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## Command Options:
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undo on
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set developer on
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webcut volume 1 with plane xplane offset 0 noimprint nomerge
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webcut volume 1 with plane yplane offset -5.25 noimprint nomerge
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imprint volume all
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merge volume all
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surface all scheme pave
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mesh surface all
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mesh volume all
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delete mesh volume all propagate
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surface all scheme trimesh
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mesh volume all
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mesh surface all
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reset
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import mesh geometry "/Users/rajeevjain/try_git/misun_protein_mesh/protein_tet_hex_coarse.exo" block all use nodeset sideset feature_angle 135 linear merge
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quality volume all aspect ratio global
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quality volume all aspect ratio global draw mesh
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reset
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reset
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reset
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webcut volume 1 with plane xplane noimprint nomerge
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mesh surface all
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list model info
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mesh volume all
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delete mesh volume all
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delete mesh volume all propagate
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merge volume all
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reset
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import mesh geometry "/Users/rajeevjain/try_git/misun_protein_mesh/protein_tet_hex_coarse.exo" block all use nodeset sideset feature_angle 135 linear merge
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delete mesh volume all propagate

‎misun_protein_mesh/history01.jou

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#!python
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cubit.cmd('set node constraint on')
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cubit.cmd('import stl "/Users/rajeevjain/try_git/misun_protein_mesh/misun_protein_mesh.stl" merge ')
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cubit.cmd('mesh vol all')
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cubit.cmd('delete mesh vol all prop')
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cubit.cmd('section vol 1 xplane')
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cubit.cmd('surf all schem trimesh')
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cubit.cmd('mesh surf all')
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cubit.cmd('undo group begin')
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cubit.cmd('set attribute off')
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cubit.cmd('export acis "/Users/rajeevjain/try_git/misun_protein_mesh/pm_acis.sat" overwrite')
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cubit.cmd('undo group end')
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cubit.cmd('undo group begin')
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cubit.cmd('set attribute off')
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cubit.cmd('export step "/Users/rajeevjain/try_git/misun_protein_mesh/pm_stp.stp" overwrite')
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cubit.cmd('undo group end')
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cubit.cmd('webvol 1 about xaxis')
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cubit.cmd('web vol 1 about xaxis')
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cubit.cmd('regularize volume all ')
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cubit.cmd('list model info')
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cubit.cmd('mesh surf all')
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cubit.cmd('webcut volume 1 with plane xplane offset 0 preview')
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cubit.cmd('webcut volume 1 with plane xplane offset 0 noimprint nomerge ')
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cubit.cmd('set developer commands on')
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cubit.cmd('webcut volume 1 with plane xplane offset 0 noimprint nomerge ')
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cubit.cmd('mesh surf all')
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cubit.cmd('merge vol all')
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cubit.cmd('merge surf all')
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cubit.cmd('mesh vol all')
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cubit.cmd('delete mesh vol all prop')
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cubit.cmd('merge vol all')
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cubit.cmd('webcut volume 1 with plane yplane offset 0 preview')
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cubit.cmd('webcut volume 1 with plane yplane offset -8.25 preview')
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cubit.cmd('webcut volume 1 with plane yplane offset -5.25 preview')
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cubit.cmd('webcut volume all with plane yplane offset -5.25 ')
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cubit.cmd('merge vol all')
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cubit.cmd('mesh surf all')
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cubit.cmd('mesh vol all')
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cubit.cmd('mesh vol 1')
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cubit.cmd('color background white')
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cubit.cmd('delete mesh vol all prop')
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cubit.cmd('dr vol 1')
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cubit.cmd('vol all scheme tetmesh')
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cubit.cmd('mesh vol all')
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cubit.cmd('dr vol all')
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cubit.cmd('help thex')
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cubit.cmd('thex vol all')
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cubit.cmd('undo group begin')
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cubit.cmd('volume all smooth scheme mean ratio cpu 1')
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cubit.cmd('smooth volume all')
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cubit.cmd('undo group end')
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cubit.cmd('undo group begin')
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cubit.cmd('volume all smooth scheme smart laplacian ')
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cubit.cmd('smooth volume all')
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cubit.cmd('undo group end')
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cubit.cmd('undo group begin')
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cubit.cmd('volume all smooth scheme laplacian ')
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cubit.cmd('smooth volume all')
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cubit.cmd('undo group end')
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cubit.cmd('undo group begin')
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cubit.cmd('volume all smooth scheme equipotential ')
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cubit.cmd('smooth volume all')
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cubit.cmd('undo group end')
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cubit.cmd('delete mesh vol all prop')
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cubit.cmd('vol all scheme tetmesh')
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cubit.cmd('mesh vol all')
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cubit.cmd('undo group begin')
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cubit.cmd('cleanup volume all')
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cubit.cmd('remesh volume all')
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cubit.cmd('undo group end')
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cubit.cmd('thex vol all')
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cubit.cmd('dr vol all')
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cubit.cmd('dr hex all')
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cubit.cmd('pwd')
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cubit.cmd('export mesh \'protein_tet_hex.exo\'')
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cubit.cmd('vol all element type hex27')
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cubit.cmd('block 1 vol all')
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cubit.cmd('block 1 element type hex27')
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cubit.cmd('export mesh \'protein_tet_hex.exo\' over')
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cubit.cmd('delete mesh vol all prop')
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cubit.cmd('mesh vol all')
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cubit.cmd('dr vol all')
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cubit.cmd('delete mesh vol all prop')
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cubit.cmd('curve all size 0.5')
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cubit.cmd('mesh vol all')
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cubit.cmd('thex vol all')
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cubit.cmd('list block 1')
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cubit.cmd('export mesh \'protein_tet_hex_coarse.exo\' over')
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cubit.cmd('pwd')
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cubit.cmd('export mesh \'protein_tet_hex_coarse.exo\' over')
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cubit.cmd('merge vol all')
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cubit.cmd('list model info')
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cubit.cmd('export mesh \'protein_tet_hex_coarse.exo\' over')
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cubit.cmd('save as \'protein_tet_hex_coarse.cub\'')
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cubit.cmd('reset')
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cubit.cmd('open \'protein_tet_hex_coarse.cub\'')
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cubit.cmd('export mesh \'protein_tet_hex_coarse.exo\' over')
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cubit.cmd('block 1 vol all')
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cubit.cmd('block 1 element type hex27')
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cubit.cmd('export mesh \'protein_tet_hex_coarse.exo\' over')
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cubit.cmd('reset')
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cubit.cmd('import mesh geometry \'protein_tet_hex_coarse.exo\'')
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cubit.cmd('undo group begin')
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cubit.cmd('volume all smooth scheme condition number beta 2.0 cpu 2')
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cubit.cmd('smooth volume all')
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cubit.cmd('undo group end')
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cubit.cmd('undo group begin')
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cubit.cmd('volume all smooth scheme mean ratio cpu 2')
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cubit.cmd('smooth volume all')
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cubit.cmd('undo group end')
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cubit.cmd('exit')

‎misun_protein_mesh/history02.jou

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#!python
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cubit.cmd('set node constraint on')
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cubit.cmd('cd')
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cubit.cmd('open "/Users/rajeevjain/try_git/misun_protein_mesh/protein_tet_hex_coarse.cub"')
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cubit.cmd('dr hex all')

‎misun_protein_mesh/history03.jou

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#!python
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cubit.cmd('set node constraint on')
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cubit.cmd('import stl "/Users/rajeevjain/try_git/misun_protein_mesh/misun_protein_mesh.stl" merge ')
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cubit.cmd('set developer on')
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cubit.cmd('webcut volume 1 with plane xplane offset 0 preview')
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cubit.cmd('webcut volume 1 with plane xplane offset 0 noimprint nomerge ')
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cubit.cmd('webcut volume 1 with plane yplane offset 0 preview')
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cubit.cmd('webcut volume 1 with plane yplane offset 5.25 preview')
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cubit.cmd('webcut volume 1 with plane yplane offset -5.25 preview')
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cubit.cmd('webcut volume 1 with plane yplane offset -5.25 noimprint nomerge ')
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cubit.cmd('imprint vol all')
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cubit.cmd('merge vol all')
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cubit.cmd('surf all scheme pave')
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cubit.cmd('mesh surf all')
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cubit.cmd('mesh vol all')
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cubit.cmd('delete mesh vol all prop')
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cubit.cmd('surf all scheme trimesh')
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cubit.cmd('mesh vol all')
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cubit.cmd('mesh surf all')
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cubit.cmd('reset')
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cubit.cmd('pwd')
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cubit.cmd('import mesh geometry "/Users/rajeevjain/try_git/misun_protein_mesh/protein_tet_hex_coarse.exo" block all use nodeset sideset feature_angle 135.00 linear merge ')
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cubit.cmd('quality volume all aspect ratio global')
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cubit.cmd('quality volume all aspect ratio global draw mesh')
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cubit.cmd('reset')
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cubit.cmd('import stl "/Users/rajeevjain/try_git/misun_protein_mesh/misun_protein_mesh.stl" merge ')
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cubit.cmd('import stl "/Users/rajeevjain/try_git/misun_protein_mesh/misun_protein_mesh.stl" merge ')
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cubit.cmd('webcut volume 1 with plane zplane preview')
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cubit.cmd('webcut volume 1 with plane yplane preview')
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cubit.cmd('reset')
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cubit.cmd('import stl "/Users/rajeevjain/try_git/misun_protein_mesh/misun_protein_mesh.stl" merge ')
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cubit.cmd('webcut volume 1 with plane yplane preview')
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cubit.cmd('webcut volume 1 with plane zplane preview')
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cubit.cmd('reste')
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cubit.cmd('reset')
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cubit.cmd('import stl "/Users/rajeevjain/try_git/misun_protein_mesh/misun_protein_mesh.stl" merge ')
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cubit.cmd('webcut volume 1 with plane zplane preview')
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cubit.cmd('webcut volume 1 with plane xplane preview')
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cubit.cmd('webcut volume 1 with plane yplane preview')
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cubit.cmd('webcut volume 1 with plane xplane preview')
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cubit.cmd('webcut volume 1 with plane xplane noimprint nomerge ')
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cubit.cmd('webcut volume 1 with plane normal to curve 1 position 0.122798 -1.44434 -5.10767 preview')
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cubit.cmd('webcut volume 1 with sheet extended from surface 3 preview')
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cubit.cmd('mesh surf all')
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cubit.cmd('list model info')
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cubit.cmd('mesh vol all')
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cubit.cmd('dr hex all')
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cubit.cmd('delete mesh vol all')
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cubit.cmd('delete mesh vol all prop')
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cubit.cmd('merge vol all')
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cubit.cmd('reset')
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cubit.cmd('mbsize protein_tet_hex_coarse.exo')
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cubit.cmd('File protein_tet_hex_coarse.exo:')
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cubit.cmd(' type count total minimum average rms maximum std.dev.')
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cubit.cmd('------- -------- ------- ----------------------- ----------------------- ----------------------- ----------------------- -----------------------')
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cubit.cmd(' Hex 289924 1e+03 0.00058362 0.0034942 0.0036207 0.01068 0.00094869')
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cubit.cmd('1D Side 3479088 5.8e+05 0.03902 0.16594 0.17776 0.4857 0.063746')
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cubit.cmd(' Vertex')
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cubit.cmd('import mesh geometry "/Users/rajeevjain/try_git/misun_protein_mesh/protein_tet_hex_coarse.exo" block all use nodeset sideset feature_angle 135.00 linear merge ')
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cubit.cmd('delete mesh vol all prop')
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cubit.cmd('webcut volume 1 with plane yplane preview')
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cubit.cmd('webcut volume 1 with plane xplane preview')

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