Can't perform augmentation when using gRpc extension

[RacmanT]

Describe the bug

Hi all! 👋
I have an application using the quarkus-grpc extension and since the 3.14.3 Quarkus version the augmentation stopped working (see steps below)

Expected behavior

2024-09-24 17:55:57,357 INFO  [io.qua.dep.QuarkusAugmentor] (main) Quarkus augmentation completed in 1470ms

Actual behavior

Exception in thread "main" java.lang.reflect.InvocationTargetException
	at java.base/jdk.internal.reflect.DirectMethodHandleAccessor.invoke(DirectMethodHandleAccessor.java:118)
	at java.base/java.lang.reflect.Method.invoke(Method.java:580)
	at io.quarkus.bootstrap.runner.QuarkusEntryPoint.doReaugment(QuarkusEntryPoint.java:90)
	at io.quarkus.bootstrap.runner.QuarkusEntryPoint.doRun(QuarkusEntryPoint.java:49)
	at io.quarkus.bootstrap.runner.QuarkusEntryPoint.main(QuarkusEntryPoint.java:33)
Caused by: java.lang.RuntimeException: io.quarkus.builder.BuildException: Build failure: Build failed due to errors
	[error]: Build step io.quarkus.deployment.pkg.steps.JarResultBuildStep#buildRunnerJar threw an exception: java.util.NoSuchElementException
	at java.base/java.util.ArrayList$Itr.next(ArrayList.java:1052)
	at java.base/java.util.Collections$UnmodifiableCollection$1.next(Collections.java:1078)
	at io.quarkus.sbom.ApplicationManifestConfig$Builder.setApplicationModel(ApplicationManifestConfig.java:46)
	at io.quarkus.deployment.pkg.steps.JarResultBuildStep.buildThinJar(JarResultBuildStep.java:598)
	at io.quarkus.deployment.pkg.steps.JarResultBuildStep.buildRunnerJar(JarResultBuildStep.java:228)
	at java.base/java.lang.invoke.MethodHandle.invokeWithArguments(MethodHandle.java:733)
	at io.quarkus.deployment.ExtensionLoader$3.execute(ExtensionLoader.java:856)
	at io.quarkus.builder.BuildContext.run(BuildContext.java:256)
	at org.jboss.threads.ContextHandler$1.runWith(ContextHandler.java:18)
	at org.jboss.threads.EnhancedQueueExecutor$Task.doRunWith(EnhancedQueueExecutor.java:2516)
	at org.jboss.threads.EnhancedQueueExecutor$Task.run(EnhancedQueueExecutor.java:2495)
	at org.jboss.threads.EnhancedQueueExecutor$ThreadBody.run(EnhancedQueueExecutor.java:1521)
	at java.base/java.lang.Thread.run(Thread.java:1583)
	at org.jboss.threads.JBossThread.run(JBossThread.java:483)

	at io.quarkus.runner.bootstrap.AugmentActionImpl.runAugment(AugmentActionImpl.java:354)
	at io.quarkus.runner.bootstrap.AugmentActionImpl.createProductionApplication(AugmentActionImpl.java:178)
	at io.quarkus.deployment.mutability.ReaugmentTask.main(ReaugmentTask.java:70)
	at java.base/jdk.internal.reflect.DirectMethodHandleAccessor.invoke(DirectMethodHandleAccessor.java:103)
	... 4 more
Caused by: io.quarkus.builder.BuildException: Build failure: Build failed due to errors
	[error]: Build step io.quarkus.deployment.pkg.steps.JarResultBuildStep#buildRunnerJar threw an exception: java.util.NoSuchElementException
	at java.base/java.util.ArrayList$Itr.next(ArrayList.java:1052)
	at java.base/java.util.Collections$UnmodifiableCollection$1.next(Collections.java:1078)
	at io.quarkus.sbom.ApplicationManifestConfig$Builder.setApplicationModel(ApplicationManifestConfig.java:46)
	at io.quarkus.deployment.pkg.steps.JarResultBuildStep.buildThinJar(JarResultBuildStep.java:598)
	at io.quarkus.deployment.pkg.steps.JarResultBuildStep.buildRunnerJar(JarResultBuildStep.java:228)
	at java.base/java.lang.invoke.MethodHandle.invokeWithArguments(MethodHandle.java:733)
	at io.quarkus.deployment.ExtensionLoader$3.execute(ExtensionLoader.java:856)
	at io.quarkus.builder.BuildContext.run(BuildContext.java:256)
	at org.jboss.threads.ContextHandler$1.runWith(ContextHandler.java:18)
	at org.jboss.threads.EnhancedQueueExecutor$Task.doRunWith(EnhancedQueueExecutor.java:2516)
	at org.jboss.threads.EnhancedQueueExecutor$Task.run(EnhancedQueueExecutor.java:2495)
	at org.jboss.threads.EnhancedQueueExecutor$ThreadBody.run(EnhancedQueueExecutor.java:1521)
	at java.base/java.lang.Thread.run(Thread.java:1583)
	at org.jboss.threads.JBossThread.run(JBossThread.java:483)

	at io.quarkus.builder.Execution.run(Execution.java:123)
	at io.quarkus.builder.BuildExecutionBuilder.execute(BuildExecutionBuilder.java:79)
	at io.quarkus.deployment.QuarkusAugmentor.run(QuarkusAugmentor.java:161)
	at io.quarkus.runner.bootstrap.AugmentActionImpl.runAugment(AugmentActionImpl.java:350)
	... 7 more
Caused by: java.util.NoSuchElementException
	at java.base/java.util.ArrayList$Itr.next(ArrayList.java:1052)
	at java.base/java.util.Collections$UnmodifiableCollection$1.next(Collections.java:1078)
	at io.quarkus.sbom.ApplicationManifestConfig$Builder.setApplicationModel(ApplicationManifestConfig.java:46)
	at io.quarkus.deployment.pkg.steps.JarResultBuildStep.buildThinJar(JarResultBuildStep.java:598)
	at io.quarkus.deployment.pkg.steps.JarResultBuildStep.buildRunnerJar(JarResultBuildStep.java:228)
	at java.base/java.lang.invoke.MethodHandle.invokeWithArguments(MethodHandle.java:733)
	at io.quarkus.deployment.ExtensionLoader$3.execute(ExtensionLoader.java:856)
	at io.quarkus.builder.BuildContext.run(BuildContext.java:256)
	at org.jboss.threads.ContextHandler$1.runWith(ContextHandler.java:18)
	at org.jboss.threads.EnhancedQueueExecutor$Task.doRunWith(EnhancedQueueExecutor.java:2516)
	at org.jboss.threads.EnhancedQueueExecutor$Task.run(EnhancedQueueExecutor.java:2495)
	at org.jboss.threads.EnhancedQueueExecutor$ThreadBody.run(EnhancedQueueExecutor.java:1521)
	at java.base/java.lang.Thread.run(Thread.java:1583)
	at org.jboss.threads.JBossThread.run(JBossThread.java:483)

How to Reproduce?

1. clone the repo grpc-plain-text-quickstart and cd .../quarkus-quickstarts/grpc-plain-text-quickstart
2. change Quarkus version in the pom.xml to <quarkus.platform.version>3.14.3</quarkus.platform.version>
3. build the app as a mutable-jar with (skipping the tests otherwise it won't build)

./mvnw clean install -Dquarkus.package.jar.type=mutable-jar -DskipTests

5. perform the augmentation with

java -jar -Dquarkus.launch.rebuild=true target/quarkus-app/quarkus-run.jar

Output of uname -a or ver

No response

Output of java -version

21

Quarkus version or git rev

>= 3.14.3

Build tool (ie. output of mvnw --version or gradlew --version)

No response

Additional information

Works as expected with the version 3.14.2. Bug persists in the 3.15.0.CR1

[quarkus-bot]

/cc @alesj (grpc), @cescoffier (grpc)

[cescoffier]

Sounds like a SBOM issue actually. @aloubyansky, WDYT?