diff --git a/extensions/flyway/runtime/src/main/java/io/quarkus/flyway/runtime/QuarkusPathLocationScanner.java b/extensions/flyway/runtime/src/main/java/io/quarkus/flyway/runtime/QuarkusPathLocationScanner.java
index 6482fb2248611..bd4807585caa7 100644
--- a/extensions/flyway/runtime/src/main/java/io/quarkus/flyway/runtime/QuarkusPathLocationScanner.java
+++ b/extensions/flyway/runtime/src/main/java/io/quarkus/flyway/runtime/QuarkusPathLocationScanner.java
@@ -1,42 +1,141 @@
 package io.quarkus.flyway.runtime;
 
+import java.io.IOException;
+import java.net.JarURLConnection;
+import java.net.URISyntaxException;
+import java.net.URL;
+import java.net.URLConnection;
+import java.nio.charset.StandardCharsets;
 import java.util.Collection;
 import java.util.Collections;
+import java.util.Enumeration;
+import java.util.HashSet;
+import java.util.Set;
+import java.util.TreeSet;
+import java.util.jar.JarEntry;
+import java.util.jar.JarFile;
 
 import org.flywaydb.core.api.Location;
 import org.flywaydb.core.api.logging.Log;
 import org.flywaydb.core.api.logging.LogFactory;
 import org.flywaydb.core.internal.resource.LoadableResource;
+import org.flywaydb.core.internal.resource.classpath.ClassPathResource;
 import org.flywaydb.core.internal.scanner.classpath.ResourceAndClassScanner;
 
 public final class QuarkusPathLocationScanner implements ResourceAndClassScanner {
-	private static final Log LOG = LogFactory.getLog( QuarkusPathLocationScanner.class );
-	private final Location location;
-
-	public QuarkusPathLocationScanner(Location location) {
-		this.location = location;
-		LOG.warn( "LOCATION " + location );
-	}
-
-	/**
-	 * Scans the classpath for resources under the configured location.
-	 *
-	 * @return The resources that were found.
-	 */
-	@Override
-	public Collection<LoadableResource> scanForResources() {
-		// NEED TO DO SOMETHING TO RETURN THE RESOURCES ADDED TO SVM in FlywayBuildStep
-		return Collections.emptyList();
-	}
-
-	/**
-	 * Scans the classpath for concrete classes under the specified package implementing this interface.
-	 * Non-instantiable abstract classes are filtered out.
-	 *
-	 * @return The non-abstract classes that were found.
-	 */
-	@Override
-	public Collection<Class<?>> scanForClasses() {
-		return Collections.emptyList();
-	}
+    private static final Log LOG = LogFactory.getLog(QuarkusPathLocationScanner.class);
+    // TODO: this should be configurable, using flyway default
+    private final static String DEFAULT_NATIVE_LOCATION = "db/migration";
+    private static Set<String> ALL_SQL_RESOURCES;
+
+    static {
+        try {
+            ALL_SQL_RESOURCES = discoverApplicationMigrations();
+        } catch (IOException | URISyntaxException e) {
+            throw new IllegalStateException("Could not discover Flyway migrations", e);
+        }
+    }
+
+    public QuarkusPathLocationScanner(Location location) {
+        if (!location.getPath().equals(DEFAULT_NATIVE_LOCATION)) {
+            LOG.error("Invalid migrations location: " + location.getPath() + ". Flyway migrations must be located in  "
+                    + DEFAULT_NATIVE_LOCATION);
+        }
+    }
+
+    /**
+     * Scans the classpath for resources under the configured DEFAULT_NATIVE_LOCATION.
+     *
+     * @return The resources that were found.
+     */
+    @Override
+    public Collection<LoadableResource> scanForResources() {
+        ClassLoader classLoader = Thread.currentThread().getContextClassLoader();
+        Set<LoadableResource> resources = new HashSet<>();
+        Location defaultLocation = new Location(DEFAULT_NATIVE_LOCATION);
+        for (String file : ALL_SQL_RESOURCES) {
+            LOG.info("Loading " + file);
+            resources.add(new ClassPathResource(defaultLocation, file, classLoader, StandardCharsets.UTF_8));
+        }
+        return resources;
+    }
+
+    private static Set<String> discoverApplicationMigrations() throws IOException, URISyntaxException {
+        Set<String> resources = new HashSet<>();
+        try {
+            Enumeration<URL> migrations = Thread.currentThread().getContextClassLoader().getResources(
+                    DEFAULT_NATIVE_LOCATION);
+            while (migrations.hasMoreElements()) {
+                URL path = migrations.nextElement();
+                LOG.info("Adding application migrations in path: " + path);
+                if ("jar".equals(path.getProtocol())) {
+                    resources = scanInJar(path);
+                } else {
+                    throw new IllegalStateException("Expecting jar file. Protocol not supported:" + path.getProtocol());
+                }
+
+            }
+            return resources;
+        } catch (IOException e) {
+            LOG.error("Error discovering application migrations: " + e.getMessage(), e);
+            throw e;
+        }
+    }
+
+    /**
+     * Scans the classpath for concrete classes under the specified package implementing this interface.
+     * Non-instantiable abstract classes are filtered out.
+     *
+     * @return The non-abstract classes that were found.
+     */
+    @Override
+    public Collection<Class<?>> scanForClasses() {
+        // Classes are not supported in native mode
+        return Collections.emptyList();
+    }
+
+    public static Set<String> scanInJar(URL locationUrl) {
+        JarFile jarFile;
+        try {
+            jarFile = getJarFromUrl(locationUrl);
+        } catch (IOException e) {
+            LOG.warn("Unable to determine jar from url (" + locationUrl + "): " + e.getMessage());
+            return Collections.emptySet();
+        }
+
+        try {
+            return findResourceNamesFromJarFile(jarFile);
+        } finally {
+            try {
+                jarFile.close();
+            } catch (IOException e) {
+                // Ignore
+            }
+        }
+    }
+
+    private static JarFile getJarFromUrl(URL locationUrl) throws IOException {
+        URLConnection con = locationUrl.openConnection();
+        if (con instanceof JarURLConnection) {
+            // Should usually be the case for traditional JAR files.
+            JarURLConnection jarCon = (JarURLConnection) con;
+            jarCon.setUseCaches(false);
+            return jarCon.getJarFile();
+        }
+        throw new IllegalStateException("Could not open the jar file " + locationUrl);
+    }
+
+    private static Set<String> findResourceNamesFromJarFile(JarFile jarFile) {
+        Set<String> resourceNames = new TreeSet<>();
+        Enumeration<JarEntry> entries = jarFile.entries();
+        while (entries.hasMoreElements()) {
+            String entryName = entries.nextElement().getName();
+            if (entryName.startsWith(DEFAULT_NATIVE_LOCATION) && !entryName.endsWith("/")) {
+                LOG.info("Discovered " + entryName);
+                resourceNames.add(entryName);
+            }
+        }
+
+        return resourceNames;
+    }
 }