Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

PHRED64 variants of Multiplexed*EndBarcodeInSequence #225

Open
colinbrislawn opened this issue Aug 18, 2019 · 1 comment
Open

PHRED64 variants of Multiplexed*EndBarcodeInSequence #225

colinbrislawn opened this issue Aug 18, 2019 · 1 comment

Comments

@colinbrislawn
Copy link
Contributor

colinbrislawn commented Aug 18, 2019

Improvement Description
Allow users to import a PHRED 64 variant of the MultiplexedSingleEndBarcodeInSequence/MultiplexedSPairedEndBarcodeInSequence.

References
form xpost

@thermokarst thermokarst transferred this issue from qiime2/q2-cutadapt Aug 18, 2019
@thermokarst thermokarst changed the title Allow flexible phred-offset PHRED64 variants of Multiplexed*EndBarcodeInSequence Aug 18, 2019
@thermokarst
Copy link
Contributor

Thanks @colinbrislawn! I transferred this issue over to q2-types, since the problem is actually with the format, and not with q2-cutadapt (cutadapt doesn't look at the quality scores when doing nucleotide pattern matching, which is all that we have exposed in q2-cutadapt at present). I think supporting a PHRED64 variant of the formats listed above would make sense, and would probably work similarly to how the PHRED64 manifests work (by converting PHRED offset on import).

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

2 participants