Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Support paired-end demux with two barcode files #62

Closed
ebolyen opened this issue Oct 23, 2017 · 4 comments
Closed

Support paired-end demux with two barcode files #62

ebolyen opened this issue Oct 23, 2017 · 4 comments
Labels
enhancement

Comments

@ebolyen
Copy link
Member

ebolyen commented Oct 23, 2017 •
edited by Mestabrook3
Loading

References

  1. This came up on the forum.
  2. QIIME 1 handled this with extract_barcodes.py.
@thermokarst
Copy link
Contributor

This recently came up on the forum.

@qins
Copy link

qins commented Sep 26, 2018

Can we simply import extract_barcodes.py to qiime2?

@thermokarst
Copy link
Contributor

@qins - maybe --- although extract_barcodes.py does quite a lot, and the issue at hand here is really just supporting dual-index demux. It might be easier to just extend the current paired-end demux support in q2-demux. Is this something you would be interested in contributing?

@ebolyen
Copy link
Member Author

ebolyen commented Apr 21, 2023

A nicer writeup can be found here: qiime2/q2-types#300

@ebolyen ebolyen closed this as completed Apr 21, 2023
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
enhancement
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
3 participants
@thermokarst @qins @ebolyen