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test.yml
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name: pytest
on:
pull_request:
push:
branches: [main]
paths:
- ".github/workflows/*"
- "pymc_experimental/**"
- "setup.py"
- "pyproject.toml"
- "buildosx"
- "conda-envs/**"
- "codecov.yml"
jobs:
ubuntu:
strategy:
matrix:
os: [ubuntu-latest]
floatx: [float64]
python-version: ["3.8"]
test-subset:
- pymc_experimental/tests
fail-fast: false
runs-on: ${{ matrix.os }}
env:
TEST_SUBSET: ${{ matrix.test-subset }}
PYTENSOR_FLAGS: floatX=${{ matrix.floatx }},gcc__cxxflags='-march=native'
defaults:
run:
shell: bash -l {0}
steps:
- uses: actions/checkout@v2
- name: Cache conda
uses: actions/cache@v1
env:
# Increase this value to reset cache if environment-test.yml has not changed
CACHE_NUMBER: 0
with:
path: ~/conda_pkgs_dir
key: ${{ runner.os }}-py${{matrix.python-version}}-conda-${{ env.CACHE_NUMBER }}-${{
hashFiles('conda-envs/environment-test.yml') }}
- name: Cache multiple paths
uses: actions/cache@v2
env:
# Increase this value to reset cache if requirements.txt has not changed
CACHE_NUMBER: 0
with:
path: |
~/.cache/pip
$RUNNER_TOOL_CACHE/Python/*
~\AppData\Local\pip\Cache
key: ${{ runner.os }}-build-${{ matrix.python-version }}-${{
hashFiles('requirements.txt') }}
- uses: conda-incubator/setup-miniconda@v2
with:
miniforge-variant: Mambaforge
miniforge-version: latest
mamba-version: "*"
activate-environment: pymc-experimental-test
channel-priority: strict
environment-file: conda-envs/environment-test.yml
python-version: ${{matrix.python-version}}
use-mamba: true
use-only-tar-bz2: true # IMPORTANT: This needs to be set for caching to work properly!
- name: Install pymc-experimental
run: |
conda activate pymc-experimental-test
pip install -e .
python --version
- name: Run tests
run: |
conda activate pymc-experimental-test
python -m pytest -vv --cov=pymc_experimental --cov-append --cov-report=xml --cov-report term --durations=50 $TEST_SUBSET
- name: Upload coverage to Codecov
uses: codecov/codecov-action@v2
with:
env_vars: TEST_SUBSET
name: ${{ matrix.os }} ${{ matrix.floatx }}
fail_ci_if_error: false
windows:
strategy:
matrix:
os: [windows-latest]
floatx: [float32]
python-version: ["3.10"]
test-subset:
- pymc_experimental/tests
fail-fast: false
runs-on: ${{ matrix.os }}
env:
TEST_SUBSET: ${{ matrix.test-subset }}
PYTENSOR_FLAGS: floatX=${{ matrix.floatx }},gcc__cxxflags='-march=core2'
defaults:
run:
shell: cmd
steps:
- uses: actions/checkout@v2
- name: Cache conda
uses: actions/cache@v1
env:
# Increase this value to reset cache if conda-envs/windows-environment-test.yml has not changed
CACHE_NUMBER: 0
with:
path: ~/conda_pkgs_dir
key: ${{ runner.os }}-py${{matrix.python-version}}-conda-${{ env.CACHE_NUMBER }}-${{
hashFiles('conda-envs/windows-environment-test.yml') }}
- name: Cache multiple paths
uses: actions/cache@v2
env:
# Increase this value to reset cache if requirements.txt has not changed
CACHE_NUMBER: 0
with:
path: |
~/.cache/pip
$RUNNER_TOOL_CACHE/Python/*
~\AppData\Local\pip\Cache
key: ${{ runner.os }}-build-${{ matrix.python-version }}-${{
hashFiles('requirements.txt') }}
- uses: conda-incubator/setup-miniconda@v2
with:
miniforge-variant: Mambaforge
miniforge-version: latest
mamba-version: "*"
activate-environment: pymc-experimental-test
channel-priority: strict
environment-file: conda-envs/windows-environment-test.yml
python-version: ${{matrix.python-version}}
use-mamba: true
use-only-tar-bz2: true # IMPORTANT: This needs to be set for caching to work properly!
- name: Install pymc-experimental
run: |
conda activate pymc-experimental-test
pip install -e .
python --version
- name: Run tests
# This job uses a cmd shell, therefore the environment variable syntax is different!
# The ">-" in the next line replaces newlines with spaces (see https://stackoverflow.com/a/66809682).
run: >-
conda activate pymc-experimental-test &&
python -m pytest -vv --cov=pymc_experimental --cov-append --cov-report=xml --cov-report term --durations=50 %TEST_SUBSET%
- name: Upload coverage to Codecov
uses: codecov/codecov-action@v2
with:
env_vars: TEST_SUBSET
name: ${{ matrix.os }} ${{ matrix.floatx }}
fail_ci_if_error: false