diff --git a/pylint/config/arguments_manager.py b/pylint/config/arguments_manager.py
index 08c8a46c54..21d60b2ec0 100644
--- a/pylint/config/arguments_manager.py
+++ b/pylint/config/arguments_manager.py
@@ -14,7 +14,7 @@
 import sys
 import warnings
 from pathlib import Path
-from typing import TYPE_CHECKING, Dict, List, Optional, TextIO, Tuple, Union
+from typing import TYPE_CHECKING, Any, Dict, List, Optional, TextIO, Tuple, Union
 
 from pylint import utils
 from pylint.config.argument import (
@@ -517,15 +517,14 @@ def _parse_toml(self, config_file: Path, parser: configparser.ConfigParser) -> N
                     parser.add_section(section_name)
                     parser.set(section_name, option, value=value)
 
-    # pylint: disable-next=fixme
-    # TODO: Optparse: All methods below this line are copied to keep API-parity with
-    # OptionsManagerMixIn. They should either be deprecated or moved above this line
-    # to keep them in _ArgumentsManager
-
-    def load_config_file(self):
+    def load_config_file(self) -> None:
         """Dispatch values previously read from a configuration file to each
         option's provider
         """
+        warnings.warn(
+            "load_config_file has been deprecated. It will be removed in pylint 3.0.",
+            DeprecationWarning,
+        )
         parser = self.cfgfile_parser
         for section in parser.sections():
             for option, value in parser.items(section):
@@ -534,16 +533,31 @@ def load_config_file(self):
                 except (KeyError, optparse.OptionError):
                     continue
 
-    def load_configuration(self, **kwargs):
+    def load_configuration(self, **kwargs: Any) -> None:
         """Override configuration according to given parameters."""
-        return self.load_configuration_from_config(kwargs)
+        warnings.warn(
+            "load_configuration has been deprecated. It will be removed in pylint 3.0.",
+            DeprecationWarning,
+        )
+        with warnings.catch_warnings():
+            warnings.filterwarnings("ignore", category=DeprecationWarning)
+            return self.load_configuration_from_config(kwargs)
 
-    def load_configuration_from_config(self, config):
+    def load_configuration_from_config(self, config: Dict[str, Any]) -> None:
+        warnings.warn(
+            "load_configuration_from_config has been deprecated. It will be removed in pylint 3.0.",
+            DeprecationWarning,
+        )
         for opt, opt_value in config.items():
             opt = opt.replace("_", "-")
             provider = self._all_options[opt]
             provider.set_option(opt, opt_value)
 
+    # pylint: disable-next=fixme
+    # TODO: Optparse: All methods below this line are copied to keep API-parity with
+    # OptionsManagerMixIn. They should either be deprecated or moved above this line
+    # to keep them in _ArgumentsManager
+
     def load_command_line_configuration(self, args=None) -> List[str]:
         """Override configuration according to command line parameters.
 
diff --git a/pylint/config/config_initialization.py b/pylint/config/config_initialization.py
index d8cf06e9c5..58537f46df 100644
--- a/pylint/config/config_initialization.py
+++ b/pylint/config/config_initialization.py
@@ -63,7 +63,9 @@ def _config_initialization(
 
     # Now we can load file config, plugins (which can
     # provide options) have been registered
-    linter.load_config_file()
+    with warnings.catch_warnings():
+        warnings.filterwarnings("ignore", category=DeprecationWarning)
+        linter.load_config_file()
 
     try:
         linter.load_command_line_configuration(args_list)
diff --git a/tests/config/test_deprecations.py b/tests/config/test_deprecations.py
new file mode 100644
index 0000000000..eaca14044d
--- /dev/null
+++ b/tests/config/test_deprecations.py
@@ -0,0 +1,36 @@
+# Licensed under the GPL: https://www.gnu.org/licenses/old-licenses/gpl-2.0.html
+# For details: https://github.com/PyCQA/pylint/blob/main/LICENSE
+# Copyright (c) https://github.com/PyCQA/pylint/blob/main/CONTRIBUTORS.txt
+
+"""Test for deprecation warnings in the config module."""
+
+
+import pytest
+
+from pylint.checkers import BaseChecker
+from pylint.lint import PyLinter
+
+
+class SampleChecker(BaseChecker):
+    options = (("test-opt", {"action": "store_true"}),)
+
+
+class TestDeprecationArgumentsManager:
+    """Tests for deprecation warnings in the ArgumentsManager class."""
+
+    linter = PyLinter()
+
+    @classmethod
+    def setup_class(cls) -> None:
+        cls.linter.register_checker(SampleChecker(cls.linter))
+
+    def test_load_configuration(self) -> None:
+        """Test that load_configuration emits a DeprecationWarning."""
+
+        with pytest.warns(DeprecationWarning):
+            self.linter.load_configuration(test_opt=True)
+
+    def test_load_configuration_from_config(self) -> None:
+        """Test that load_configuration_from_config emits a DeprecationWarning."""
+        with pytest.warns(DeprecationWarning):
+            self.linter.load_configuration_from_config({"test_opt": True})