dune-project

(lang dune 1.11)
(generate_opam_files true)

(name bistro)
(source (github pveber/bistro))
(homepage "https://github.com/pveber/bistro/")
(bug_reports "https://github.com/pveber/bistro/issues")
(license CeCILL-B)
(authors "Philippe Veber")
(maintainers "philippe.veber@gmail.com")

(package
  (name bistro-bio)
  (synopsis "Bistro workflows for computational biology")
  (tags (bioinformatics))
  (description "
This library provides wrappers for popular tools for genomics, transcriptomics
and phylogeny, as well as custom tools to help piping data from one tool to the
other.
")
  (depends biotk tyxml bistro))

(package
  (name bistro)
  (tags (workflow pipeline))
  (synopsis "A library to build and run distributed scientific workflows")
  (description "
bistro is an OCaml library to build and run computations represented
by a collection of interdependent scripts or OCaml functions, as is
often found in data analysis.

Features:
- build complex and composable workflows declaratively
- simple and lightweight wrapping of new components
- resume-on-failure: if something fails, fix it and the workflow will
  restart from where it stopped
- parallel workflow execution
- development-friendly: when a script is modified, bistro
  automatically finds out what needs to be recomputed
- automatic naming of generated files
- static typing: detect file format errors at compile time
")
  (depends
    (base64 (>= 3.0.0))
    bos
    (dune (> 1.6))
    (core (>= 0.15.0))
    (core_unix (>= 0.15.0))
    (lwt (>= 3.2.0))
    lwt_react
    (ocamlgraph (>= 1.8.7))
    (ocaml (>= 4.08.0))
    (ppxlib (>= 0.23.0))
    ppx_sexp_conv
    rresult
    (sexplib (>= 113.24.00))
    (streaming (>= 0.8.0))
    (tyxml (>= 4.3.0))))