diff --git a/presto-iceberg/src/main/java/com/facebook/presto/iceberg/optimizer/IcebergEqualityDeleteAsJoin.java b/presto-iceberg/src/main/java/com/facebook/presto/iceberg/optimizer/IcebergEqualityDeleteAsJoin.java
index 442d6df9f03f9..f9b3730467a07 100644
--- a/presto-iceberg/src/main/java/com/facebook/presto/iceberg/optimizer/IcebergEqualityDeleteAsJoin.java
+++ b/presto-iceberg/src/main/java/com/facebook/presto/iceberg/optimizer/IcebergEqualityDeleteAsJoin.java
@@ -35,12 +35,14 @@
 import com.facebook.presto.spi.VariableAllocator;
 import com.facebook.presto.spi.function.FunctionHandle;
 import com.facebook.presto.spi.function.StandardFunctionResolution;
+import com.facebook.presto.spi.plan.Assignments;
 import com.facebook.presto.spi.plan.ConnectorJoinNode;
 import com.facebook.presto.spi.plan.EquiJoinClause;
 import com.facebook.presto.spi.plan.FilterNode;
 import com.facebook.presto.spi.plan.JoinType;
 import com.facebook.presto.spi.plan.PlanNode;
 import com.facebook.presto.spi.plan.PlanNodeIdAllocator;
+import com.facebook.presto.spi.plan.ProjectNode;
 import com.facebook.presto.spi.plan.TableScanNode;
 import com.facebook.presto.spi.relation.CallExpression;
 import com.facebook.presto.spi.relation.RowExpression;
@@ -251,7 +253,11 @@ public PlanNode visitTableScan(TableScanNode node, RewriteContext<Void> context)
                     new SpecialFormExpression(SpecialFormExpression.Form.IS_NULL, BooleanType.BOOLEAN,
                             new SpecialFormExpression(SpecialFormExpression.Form.COALESCE, BigintType.BIGINT, deleteVersionColumns)));
 
-            return filter;
+            Assignments.Builder assignmentsBuilder = Assignments.builder();
+            filter.getOutputVariables().stream()
+                    .filter(variableReferenceExpression -> !variableReferenceExpression.getName().startsWith(DATA_SEQUENCE_NUMBER_COLUMN_HANDLE.getName()))
+                    .forEach(variableReferenceExpression -> assignmentsBuilder.put(variableReferenceExpression, variableReferenceExpression));
+            return new ProjectNode(Optional.empty(), idAllocator.getNextId(), filter, assignmentsBuilder.build(), ProjectNode.Locality.LOCAL);
         }
 
         private static ImmutableMap<Set<Integer>, DeleteSetInfo> collectDeleteInformation(Table icebergTable,
diff --git a/presto-iceberg/src/test/java/com/facebook/presto/iceberg/IcebergDistributedTestBase.java b/presto-iceberg/src/test/java/com/facebook/presto/iceberg/IcebergDistributedTestBase.java
index f67d3bdb3510f..bb38f158a490a 100644
--- a/presto-iceberg/src/test/java/com/facebook/presto/iceberg/IcebergDistributedTestBase.java
+++ b/presto-iceberg/src/test/java/com/facebook/presto/iceberg/IcebergDistributedTestBase.java
@@ -935,6 +935,26 @@ public void testTableWithEqualityDeleteDifferentColumnOrder(String fileFormat, b
         assertQuery(session, "SELECT nationkey, comment FROM " + tableName, "SELECT nationkey, comment FROM nation WHERE name != 'ARGENTINA'");
     }
 
+    @Test(dataProvider = "equalityDeleteOptions")
+    public void testTableWithEqualityDeleteAndGroupByAndLimit(String fileFormat, boolean joinRewriteEnabled)
+            throws Exception
+    {
+        Session session = deleteAsJoinEnabled(joinRewriteEnabled);
+        Session disable = deleteAsJoinEnabled(false);
+        // Specify equality delete filter with different column order from table definition
+        String tableName = "test_v2_equality_delete_different_order" + randomTableSuffix();
+        assertUpdate(session, "CREATE TABLE " + tableName + " with (format = '" + fileFormat + "') AS SELECT * FROM tpch.tiny.nation", 25);
+        Table icebergTable = updateTable(tableName);
+
+        writeEqualityDeleteToNationTable(icebergTable, ImmutableMap.of("regionkey", 1L, "name", "ARGENTINA"));
+        assertQuery(session, "SELECT * FROM " + tableName, "SELECT * FROM nation WHERE name != 'ARGENTINA'");
+
+        // Test group by
+        assertQuery(session, "SELECT nationkey FROM " + tableName + " group by nationkey", "VALUES(0),(2),(3),(4),(5),(6),(7),(8),(9),(10),(11),(12),(13),(14),(15),(16),(17),(18),(19),(20),(21),(22),(23),(24)");
+        // Test group by with limit
+        assertQueryWithSameQueryRunner(session, "SELECT nationkey FROM " + tableName + " group by nationkey limit 100", disable);
+    }
+
     @Test(dataProvider = "equalityDeleteOptions")
     public void testTableWithPositionDeleteAndEqualityDelete(String fileFormat, boolean joinRewriteEnabled)
             throws Exception