1.2.0

Release Notes

This release marks a substantial renaming of derivatives to conform to the BIDS Derivatives specification release candidate.

The most significant additional change is a substantial revision of BOLD skull-stripping, using a BOLD template constructed from many open datasets. Building off the work of Zhifang Ye (see #1050), the skull-stripping is now much more resilient to intensity inhomogeneity.

With many thanks to Ali Cohen, James Kent, Inge Amlien, Sebastian Urchs, and Zhifang Ye for contributions.

Changes

• [FIX] Missing BOLD reports (#1326) @oesteban
• [FIX] Ensure encoding when reading boilerplate (#1322) @alioco
• [FIX] Reportlets - bbregister vs flirtbbr (continues #1326) (#1328) @oesteban
• [FIX] Quick update to new template structure (#1330) @oesteban
• [FIX] Explicitly pass bold mask to AROMA (#1332) @jdkent
• [FIX] Missing report output - #1339 (#1346) @kasbohm
• [FIX] Remove non-steady-state volumes prior to ICA-AROMA (#1335) @jdkent
• [ENH] Store BOLD reference images (#1306) @oesteban
• [ENH] Deprecate --debug with --sloppy (#1347) @effigies
• [ENH] Conform confound regressor names to Derivatives RC2 (#1343) @effigies
• [ENH] Do not set KEEP_FILE_OPEN_DEFAULT (#1356) @effigies
• [ENH] Template-based masking of EPI boldrefs (#1321) @oesteban
• [DOC] Update BIDS-validator link (#1320) @surchs
• [DOC] add --bind method to singularity patch documentation (#1340) @jdkent
• [RF] Update anatomical derivatives for RC1 (#1325) @effigies
• [RF] Update functional derivatives for RC1 (#1333) @effigies
• [TST] Add heavily-nonuniform boldrefs for regression tests (#1329) @oesteban
• [TST] Fix expectations for CIFTI outputs & ds005 (#1344) @oesteban
• [MAINT] Ignore project settings files from popular python/code editors (#1336) @jdkent
• [CI] Deploy poldracklab/fmriprep:unstable tracking master (#1307) @effigies