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File encoding error #28

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vertesy opened this issue Mar 31, 2014 · 0 comments
Open

File encoding error #28

vertesy opened this issue Mar 31, 2014 · 0 comments

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@vertesy
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vertesy commented Mar 31, 2014

After correct installation of Ruby 2.X and biotables, I created a table1.csv file and tried to convert it in the frame of Advanced Bioinformatics / Bio-Tables practical.

bio-table table1.csv --in-format csv --format tab > test1.tab
bio-table 0.9.0 Copyright (C) 2012 Pjotr Prins [email protected]

INFO bio-table: Array: [{:show_help=>false, :write_header=>true, :skip=>0, :in_format=>:csv, :format=>:tab}]
/usr/local/Cellar/ruby/2.1.1/lib/ruby/2.1.0/csv.rb:1988:in =~': invalid byte sequence in US-ASCII (ArgumentError) from /usr/local/Cellar/ruby/2.1.1/lib/ruby/2.1.0/csv.rb:1988:ininit_separators'
from /usr/local/Cellar/ruby/2.1.1/lib/ruby/2.1.0/csv.rb:1513:in initialize' from /usr/local/Cellar/ruby/2.1.1/lib/ruby/2.1.0/csv.rb:1290:innew'
from /usr/local/Cellar/ruby/2.1.1/lib/ruby/2.1.0/csv.rb:1290:in parse' from /usr/local/Cellar/ruby/2.1.1/lib/ruby/gems/2.1.0/gems/bio-table-0.9.0/lib/bio-table/parser.rb:10:inparse'
from /usr/local/Cellar/ruby/2.1.1/lib/ruby/gems/2.1.0/gems/bio-table-0.9.0/lib/bio-table/table_apply.rb:36:in parse_header' from /usr/local/Cellar/ruby/2.1.1/lib/ruby/gems/2.1.0/gems/bio-table-0.9.0/lib/bio-table/tableload.rb:22:inblock (2 levels) in emit'
from /usr/local/Cellar/ruby/2.1.1/lib/ruby/gems/2.1.0/gems/bio-table-0.9.0/lib/bio-table/tableload.rb:19:in each' from /usr/local/Cellar/ruby/2.1.1/lib/ruby/gems/2.1.0/gems/bio-table-0.9.0/lib/bio-table/tableload.rb:19:ineach_with_index'
from /usr/local/Cellar/ruby/2.1.1/lib/ruby/gems/2.1.0/gems/bio-table-0.9.0/lib/bio-table/tableload.rb:19:in block in emit' from /usr/local/Cellar/ruby/2.1.1/lib/ruby/gems/2.1.0/gems/bio-table-0.9.0/bin/bio-table:271:ineach'
from /usr/local/Cellar/ruby/2.1.1/lib/ruby/gems/2.1.0/gems/bio-table-0.9.0/bin/bio-table:271:in each' from /usr/local/Cellar/ruby/2.1.1/lib/ruby/gems/2.1.0/gems/bio-table-0.9.0/bin/bio-table:271:inblock in

'
from /usr/local/Cellar/ruby/2.1.1/lib/ruby/gems/2.1.0/gems/bio-table-0.9.0/bin/bio-table:264:in each' from /usr/local/Cellar/ruby/2.1.1/lib/ruby/gems/2.1.0/gems/bio-table-0.9.0/bin/bio-table:264:in'

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