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starDisks
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#!/bin/bash
#
# This script will be executed when spaceExplorer.sh is run.
#
# Compiles and runs equilibrium and torus models and obtains results.
# To restart models automatically if Y2 has not converged when maxSteps
# has been reached, set "neverRestart" to "false" in the notDone
# function at the top of the getValues script.
n=$1
q=$2
m=$3
starMass=$4
jin=$5
maxSteps=$6
jmax=$7
scriptDir=$(dirname `dirname $(pwd)`)
val="$scriptDir/./getValues $(pwd)"
chmod +x $scriptDir/getValues
####################################################################################################
# RUN EQUILIBRIUM MODEL
echo "Compiling hscf.f..."
cp $scriptDir/hscf.f .
echo "
parameter (jmax = ${jmax},
1 kmax = ${jmax},
2 max = 25000)
c 32x32 wfw(452)
c 64x64 wfw(1030)
c 128x128 wfw(2315)
c 256x256 wfw(5132)
c 512x512 wfw(11279)
c 1024x1024 wfw(24593)
c 2048x2048 wfw(53264)
" > param.h
# ifort -O -mp -r8 -o hscf hscf.f
gfortran -fdefault-real-8 -O2 -o hscf hscf.f
echo "Running equilibrium model..."
echo "1 : 0 = white dwarf 1 = polytrope
0 : 0 = dead start 1 = jump start
${n} -${q} ${jmax} ${jmax} ${jmax} -${jin} 0.0 0.8 ${starMass} : n n' jold kold jout kout log(rho) del starm
" > hscf.in
./hscf < hscf.in > hscf.out
rm param.h hscf hscf.in hscf.f
#plot eqContour
echo "Generating contour plot..."
r=`echo "scale=2; $($val rInOut)/1" | bc`
plotCommand="
reset\n
set terminal png\n
set output \"eqContour.png\"\n
set title \"m${m}/n${n}/q${q}/r-+${r}-j${jin}/M${starMass}/${jmax}\"\n
set contour\n
set cntrparam levels incremental 1.0e-30,$(echo "scale=7; $($val rhomax)/10" | bc),$($val rhomax)\n
set size square\n
set grid\n
set mxtics\n
set mytics\n
set nosurface\n
set view 0,0\n
set data style lines\n
set nokey\n
splot 'fort.47' ti \"fort.47\"\n
"
echo -e $plotCommand | gnuplot
#
####################################################################################################
# RUN TORUS MODEL
if [ $maxSteps -gt 0 ]; then
echo "Compiling torus.f..."
cp $scriptDir/torus.f .
echo "
c version: 9 May 2005
parameter (jmax=${jmax},jmax1=jmax+1,jmax2=jmax+2,jmax3=jmax-1,
1 kmax=${jmax},kmax1=kmax+1,kmax2=kmax+2,kmax3=kmax-1,
2 lmax=16,lmax1=lmax/2+1,lmax2=lmax-2,
3 max=25000,jkm1=jmax+kmax-1,neq=8)
c 32x32 wfw(452)
c 64x64 wfw(1030)
c 128x128 wfw(2312)
c 256x256 wfw(5130)
c 512x512 wfw(11276)
c 1024x1024 wfw(24590)
" > param.h
# ifort -O -mp -r8 -o hscf hscf.f
gfortran -fdefault-real-8 -O2 -o torus torus.f
echo "Running torus model..."
rerun=0
Time=0
if [ -f fort.11 ] && [ ! -f fort.51 ]; then
mv fort.11 fort.51
fi
###### restart if fort.51 already present
if [ -f fort.51 ]; then
rerun=1
mv fort.51 fort.11
if [ -f fort.22 ]; then
numlines=$(cat fort.22 | wc -l)
ourline=$(( $numlines - $numlines % 100 ))
Time=$(sed -n ${ourline}p fort.22 | cut -c 1-15)
fi
if [ -f fort.23 ]; then
if [ -f fort.23a ]; then
cp fort.23a temp
cat fort.23 >> temp
rm fort.23 fort.23a
mv temp fort.23
fi
cp fort.23 fort.23a
fi
fi
##### create torus.in file
echo "fort.2
${m} : m
0 : 1 turns off self gravity
${n},0,.75 : n, 0 to use data file and 100xq otherwise, rin
${q} : q
2.0 : tstep power
${maxSteps} : max steps
${rerun},${Time} : 1 to restart,time; mv fort.51 fort.11
" > torus.in
##### execute with torus.in
./torus < torus.in > torus.out
rm param.h torus torus.in torus.f
fi
#
####################################################################################################
# GET RESULTS
echo "Getting model results..."
# Combine new fort.23 if restarting
if [ -f fort.23a ]; then
cp fort.23a temp
cat fort.23 >> temp
rm fort.23 fort.23a
mv temp fort.23
fi
##### Generate and save images with gnuplot.
r=`echo "scale=2; $($val rInOut)/1" | bc`
#plotit
plotCommand="
reset\n
set terminal png\n
set output \"plotit.png\"\n
set title \"m${m}/n${n}/q${q}/r-+${r}-j${jin}/M${starMass}/${jmax}\"\n
set logscale y\n
set autoscale\n
plot 'fort.23' using 1:2 with lines ti \"fort.23\",\
'fort.23' using 1:4 with lines notitle,\
'fort.23' using 1:6 with lines notitle\n
"
echo -e $plotCommand | gnuplot
#plotit2
plotCommand="
reset\n
set terminal png\n
set output \"plotit2.png\"\n
set title \"m${m}/n${n}/q${q}/r-+${r}-j${jin}/M${starMass}/${jmax}\"\n
set auto\n
plot 'fort.23' using 1:3 with lines ti \"fort.23\",\
'fort.23' using 1:5 with lines notitle,\
'fort.23' using 1:7 with lines notitle\n
"
echo -e $plotCommand | gnuplot
#ee1
plotCommand="
reset\n
set terminal png\n
set output \"ee1.png\"\n
set title \"m${m}/n${n}/q${q}/r-+${r}-j${jin}/M${starMass}/${jmax}\"\n
set logscale y\n
set auto\n
plot 'fort.52' using 1:2 with lines lt 3 ti \"drho\",\
'fort.52' using 1:3 with lines lt 1 ti \"dW\"\n
"
echo -e $plotCommand | gnuplot
#ee2m1/ee2m2
if [ "${m}" = "1" ]; then
points="'fort.63' with points lt 1 ti \"W phase\",
'fort.53' with points lt 3 ti \"drho phase\","
elif [ "${m}" = "2" ]; then
points="'fort.63' with points lt 1 ti \"W phase\",
'fort.53' with points lt 3 ti \"drho phase\",
'fort.63' using 3:2 with points lt 1 notitle,
'fort.53' using 3:2 with points lt 3 notitle,"
elif [ "${m}" = "3" ]; then
points="'fort.64' with points lt 1 ti \"W phase\",
'fort.54' with points lt 3 ti \"drho phase\",
'fort.64' using 3:2 with points lt 1 notitle,
'fort.54' using 3:2 with points lt 3 notitle,
'fort.64' using 4:2 with points lt 1 notitle,
'fort.54' using 4:2 with points lt 3 notitle,"
elif [ "${m}" = "4" ]; then
points="'fort.63' with points lt 1 ti \"W phase\",
'fort.53' with points lt 3 ti \"drho phase\",
'fort.63' using 3:2 with points lt 1 notitle,
'fort.53' using 3:2 with points lt 3 notitle,
'fort.63' using 4:2 with points lt 1 notitle,
'fort.53' using 4:2 with points lt 3 notitle,
'fort.63' using 5:2 with points lt 1 notitle,
'fort.53' using 5:2 with points lt 3 notitle,"
fi
rPlus=`echo "scale=2; $($val rPlusR0)/1" | bc`
rMinus=`echo "scale=2; $($val rMinusR0)/1" | bc`
if [ "$($val RcoR0)" = "NaN" ]; then
plotRcR0=0
dispRcR0=NaN
elif [ `echo "$($val RcoR0) > $rPlus" | bc` = 1 ]; then
plotRcR0=0
dispRcR0=$(echo "scale=2; $($val RcoR0)/1" | bc)
else
plotRcR0=$(echo "scale=2; $($val RcoR0)/1" | bc)
dispRcR0=$plotRcR0
fi
plotCommand="
reset\n
set terminal png\n
set output \"ee2m${m}.png\"\n
set title \"m${m}/n${n}/q${q}/r-+${r}-j${jin}/M${starMass}/${jmax}\"\n
set polar\n
set angles degrees\n
set size square\n
set samples 160,160\n
set trange [0:360]\n
plot ${points}
${rPlus} lt 3 ti \"r+/ro = ${rPlus}\",
1.00 lt 4 ti \"ro/ro = 1.00\",
${rMinus} lt 3 ti \"r-/ro = ${rMinus}\",
${plotRcR0} lt 5 ti \"rc/ro = ${dispRcR0}\"\n
"
echo -e $plotCommand | gnuplot
#ee3
plotCommand="
reset\n
set terminal png\n
set output \"ee3.png\"\n
set title \"m${m}/n${n}/q${q}/r-+${r}-j${jin}/M${starMass}/${jmax}\"\n
set auto\n
plot 'fort.66' using 1:2 with lines lt 3 ti 'torque'\n
"
echo -e $plotCommand | gnuplot
#ee4
plotCommand="
reset\n
set terminal png\n
set output \"ee4.png\"\n
set title \"m${m}/n${n}/q${q}/r-+${r}-j${jin}/M${starMass}/${jmax}\"\n
set auto\n
plot 'fort.27' using 1:3 with points lt 3 ti 'Ek',\
'fort.27' using 1:2 with points lt 6 ti 'Eh'\n
"
echo -e $plotCommand | gnuplot
#ee5
plotCommand="
reset\n
set terminal png\n
set output \"ee5.png\"\n
set title \"m${m}/n${n}/q${q}/r-+${r}-j${jin}/M${starMass}/${jmax}\"\n
set auto\n
plot 'fort.28' using 1:2 with points lt 0 ti 'R stress',\
'fort.28' using 1:3 with points lt 1 ti 'G work',\
'fort.28' using 1:4 with points lt 3 ti 'Acoustic flux'\n
"
echo -e $plotCommand | gnuplot
#ee6
plotCommand="
reset\n
set terminal png\n
set output \"ee6.png\"\n
set title \"m${m}/n${n}/q${q}/r-+${r}-j${jin}/M${starMass}/${jmax}\"\n
set auto\n
plot 'fort.29' using 1:2 with lines ti 'dj'\n
"
echo -e $plotCommand | gnuplot
#ee8
plotCommand="
reset\n
set terminal png\n
set output \"ee8.png\"\n
set title \"m${m}/n${n}/q${q}/r-+${r}-j${jin}/M${starMass}/${jmax}\"\n
set auto\n
plot 'fort.76' using 1:2 with points lt 0 ti 'R stress/E',\
'fort.76' using 1:3 with points lt 1 ti 'G work/E',\
'fort.76' using 1:4 with points lt 3 ti 'Acoustic flux/E'\n
"
echo -e $plotCommand | gnuplot
#
####################################################################################################
# RESTART IF REQUIRED
if [ $($val notDone) ] && [ $maxSteps -gt 0 ]; then
echo -e "\nStarting another run..."
qsub -l nodes=1:ppn=1,walltime=168:00:00 -j oe -o output.txt ./$(basename `pwd`)
else
echo -e "\nDone."
fi
#
####################################################################################################