diff --git a/.github/workflows/spellcheck.yaml b/.github/workflows/spellcheck.yaml new file mode 100644 index 00000000..20184f8b --- /dev/null +++ b/.github/workflows/spellcheck.yaml @@ -0,0 +1,15 @@ +name: Run spell checker +on: + push: + branches: + - master + pull_request: + branches: + - master + +jobs: + deploy: + runs-on: ubuntu-latest + steps: + - uses: actions/checkout@v4 + - uses: crate-ci/typos@v1.19.0 \ No newline at end of file diff --git a/docs/pephub/user/pipelines.md b/docs/pephub/user/pipelines.md index 58fecae1..6963dcb6 100644 --- a/docs/pephub/user/pipelines.md +++ b/docs/pephub/user/pipelines.md @@ -29,4 +29,5 @@ for sample in pep['items']: subprocess.run(f"gatk BaseRecalibrator -I {file_path} -R /path/to/{genome}.fa") ``` -This is a simple example, but you can see how you can use the PEP to manage your samples and easily integrate them into your workflows. You can use the PEPhub API to get the PEP and then iterate over the samples to run your commands. \ No newline at end of file +This is a simple example, but you can see how you can use the PEP to manage your samples and easily integrate them into your workflows. You can use the PEPhub API to get the PEP and then iterate over the samples to run your commands. +