From 3a9874ef53c2a02521fd8e561aa8485bdf44ef86 Mon Sep 17 00:00:00 2001 From: Donald Campbell <125581724+donaldcampbelljr@users.noreply.github.com> Date: Mon, 26 Aug 2024 12:12:35 -0400 Subject: [PATCH] allow calling pephub_path directly from pipestat namespace, version bump pipestat to 0.10.2, Fixes #519 --- looper/conductor.py | 1 + requirements/requirements-all.txt | 2 +- 2 files changed, 2 insertions(+), 1 deletion(-) diff --git a/looper/conductor.py b/looper/conductor.py index 70960d1f..231a2366 100644 --- a/looper/conductor.py +++ b/looper/conductor.py @@ -661,6 +661,7 @@ def _set_pipestat_namespace( "record_identifier": psm.record_identifier, "config_file": psm.config_path, "output_schema": psm.cfg["_schema_path"], + "pephub_path": psm.cfg["pephub_path"], } filtered_namespace = {k: v for k, v in full_namespace.items() if v} return YAMLConfigManager(filtered_namespace) diff --git a/requirements/requirements-all.txt b/requirements/requirements-all.txt index 77cb7728..3db01243 100644 --- a/requirements/requirements-all.txt +++ b/requirements/requirements-all.txt @@ -5,7 +5,7 @@ jinja2 logmuse>=0.2.0 pandas>=2.0.2 pephubclient>=0.4.0 -pipestat>=0.9.2 +pipestat>=0.10.2 peppy>=0.40.4 pyyaml>=3.12 rich>=9.10.0