DESCRIPTION

Type: Package
Package: sdmTMB
Title: Spatial and Spatiotemporal SPDE-Based GLMMs with 'TMB'
Version: 0.6.0.9013
Authors@R: c(
    person(c("Sean", "C."), "Anderson", , "sean@seananderson.ca",
           role = c("aut", "cre"),
           comment = c(ORCID = "0000-0001-9563-1937")),
    person(c("Eric", "J."), "Ward", role = "aut",
           comment = c(ORCID = "0000-0002-4359-0296")),
    person(c("Philina", "A."), "English", role = "aut",
           comment = c(ORCID = "0000-0003-2992-6782")),
    person(c("Lewis", "A.", "K."), "Barnett", role = "aut",
           comment = c(ORCID = "0000-0002-9381-8375")),
    person(c("James", "T."), "Thorson", role = c("aut", "cph"),
           comment = c(ORCID = "0000-0001-7415-1010", "VAST author")),
    person("Joe", "Watson", role = "ctb", comment = "Censored Poisson"),
    person("Julia", "Indivero", role = c("ctb"),
           comment = c("Vignette writing")),
    person(c("Jillian", "C."), "Dunic", role = c("ctb"),
           comment = c(ORCID = "0000-0002-0729-3083")),
    person(c("Cole", "C."), "Monnahan", role = c("ctb", "cph"),
           comment = c(ORCID = "0000-0003-0871-6700", "VAST contributor")),
    person("Mollie", "Brooks", role = c("ctb", "cph"),
           comment = c(ORCID = "0000-0001-6963-8326", "glmmTMB author")),
    person("Ben", "Bolker", role = c("ctb", "cph"),
           comment = c(ORCID = "0000-0002-2127-0443", "glmmTMB author")),
    person("Kasper", "Kristensen", role = c("ctb", "cph"),
           comment = "TMB/glmmTMB author"),
    person("Martin", "Maechler", role = c("ctb", "cph"),
           comment = c(ORCID = "0000-0002-8685-9910", "glmmTMB author")),
    person("Arni", "Magnusson", role = c("ctb", "cph"),
           comment = c(ORCID = "0000-0003-2769-6741", "glmmTMB author")),
    person(c("Hans", "J."), "Skaug", role = c("ctb", "cph"),
           comment = "glmmTMB author, SPDE barrier"),
    person("Anders", "Nielsen", role = c("ctb", "cph"),
           comment = c(ORCID = "0000-0001-9683-9262", "glmmTMB author")),
    person("Casper", "Berg", role = c("ctb", "cph"),
           comment = c(ORCID = "0000-0002-3812-5269", "glmmTMB author")),
    person("Koen", "van Bentham", role = c("ctb", "cph"),
           comment = "glmmTMB author"),
    person(c("Olav", "Nikolai"), "Breivik", role = c("ctb", "cph"),
           comment = "SPDE barrier"),
    person("Simon", "Wood", role = c("ctb", "cph"),
           comment = "mgcv: smoother prediction"),
    person("Paul-Christian", "Bürkner", role = c("ctb", "cph"),
           comment = "brms: smoother matrix parsing"),
    person(paste("His Majesty the King in Right of Canada, as represented by",
           "the Minister of the Department of Fisheries and Oceans"),
           role = "cph")
  )
Description: Implements spatial and spatiotemporal GLMMs (Generalized Linear
    Mixed Effect Models) using 'TMB', 'fmesher', and the SPDE (Stochastic Partial
    Differential Equation) Gaussian Markov random field approximation to
    Gaussian random fields. One common application is for spatially explicit
    species distribution models (SDMs).
    See Anderson et al. (2024) <doi:10.1101/2022.03.24.485545>.
License: GPL-3
Copyright: inst/COPYRIGHTS
URL: https://pbs-assess.github.io/sdmTMB/, https://github.com/pbs-assess/sdmTMB
BugReports: https://github.com/pbs-assess/sdmTMB/issues
Depends:
    R (>= 3.5.0)
Imports:
    assertthat,
    abind,
    clisymbols,
    cli,
    fmesher,
    fishMod,
    generics,
    graphics,
    lifecycle,
    lme4,
    Matrix,
    methods,
    mgcv,
    mvtnorm,
    nlme,
    rlang,
    stats,
    TMB (>= 1.8.0)
Suggests:
    DHARMa,
    dplyr,
    effects (>= 4.0-1),
    estimability,
    emmeans (>= 1.4),
    future,
    future.apply,
    ggeffects,
    ggforce,
    glmmTMB,
    ggplot2,
    knitr,
    rmarkdown,
    sf,
    splancs,
    testthat,
    tibble,
    visreg
LinkingTo:
    RcppEigen,
    TMB
VignetteBuilder:
    knitr
ByteCompile: true
Config/testthat/edition: 3
Config/testthat/parallel: true
Encoding: UTF-8
LazyData: true
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
SystemRequirements: GNU make