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Hello,
While contrast argument of DeseqStats() is explained well in "A simple PyDESeq2 workflow", ref_level argument of DeseqDataSet() and its importance to match the contrasts in design_matrix and DeseqStats are not described. Although the error message directly suggests a solution, seeing it beforehand in the documentation would be better.
Thank you for the tool. Regards.
The text was updated successfully, but these errors were encountered:
Hello,
While contrast argument of DeseqStats() is explained well in "A simple PyDESeq2 workflow", ref_level argument of DeseqDataSet() and its importance to match the contrasts in design_matrix and DeseqStats are not described. Although the error message directly suggests a solution, seeing it beforehand in the documentation would be better.
Thank you for the tool. Regards.
The text was updated successfully, but these errors were encountered: