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@qiime2 QIIME 2

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    77 repositories

    • homepage

      Public
      https://qiime2.org
      Astro
      •
      MIT License
      •0•0•0•0•Updated Mar 13, 2025Mar 13, 2025

    • library

      Public
      A website for sharing QIIME 2 Plugins
      Svelte
      •
      BSD 3-Clause "New" or "Revised" License
      •1•0•2•0•Updated Mar 13, 2025Mar 13, 2025

    • q2-fmt

      Public
      q2-fmt is an all-in-one suite for assessing engraftment extent following Fecal Microbiota Transplants!
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •11•4•7•2•Updated Mar 12, 2025Mar 12, 2025

    • q2-types

      Public
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •42•17•25•2•Updated Mar 11, 2025Mar 11, 2025

    • library-plugins

      Public
      Stores a list of the repos that are included in the QIIME 2 library
      BSD 3-Clause "New" or "Revised" License
      •5•0•0•2•Updated Mar 11, 2025Mar 11, 2025

    • q2view

      Public
      A web-based "serverless" viewer of QIIME 2 Artifacts and Visualizations
      TypeScript
      •
      BSD 3-Clause "New" or "Revised" License
      •1•1•3•2•Updated Mar 10, 2025Mar 10, 2025

    • distributions

      Public
      Makefile
      •
      BSD 3-Clause "New" or "Revised" License
      •5•1•4•0•Updated Mar 9, 2025Mar 9, 2025

    • amplicon-docs

      Public
      Source for QIIME 2 amplicon documentation.
      Makefile
      •0•0•3•1•Updated Mar 7, 2025Mar 7, 2025

    • q2-composition

      Public
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •27•6•7•1•Updated Feb 27, 2025Feb 27, 2025

    • q2doc

      Public
      A MyST executable plugin for documenting QIIME 2 plugins.
      Python
      •
      Other
      •0•0•2•0•Updated Feb 26, 2025Feb 26, 2025

    • q2-feature-classifier

      Public
      QIIME 2 plugin supporting taxonomic classification
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •38•19•8•1•Updated Feb 20, 2025Feb 20, 2025

    • q2-vsearch

      Public
      vsearch plugin for QIIME 2
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •22•6•8•0•Updated Feb 20, 2025Feb 20, 2025

    • action-library-packaging

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •5•0•0•1•Updated Feb 17, 2025Feb 17, 2025

    • discourse-unhandled-tagger

      Public
      Simple plugin that tags topics automatically if non-staff replies
      Ruby
      •
      MIT License
      •7•0•0•0•Updated Feb 14, 2025Feb 14, 2025

    • resources

      Public
      Source for QIIME 2 Resources page.
      TeX
      •
      BSD 3-Clause "New" or "Revised" License
      •4•1•1•0•Updated Feb 13, 2025Feb 13, 2025

    • static-site-infrastructure

      Public
      Dockerfile
      •
      BSD 3-Clause "New" or "Revised" License
      •3•0•3•0•Updated Feb 13, 2025Feb 13, 2025

    • q2-dada2

      Public
      QIIME 2 plugin wrapping DADA2
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •37•20•10•1•Updated Feb 11, 2025Feb 11, 2025

    • q2-cutadapt

      Public
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •18•3•3•0•Updated Feb 10, 2025Feb 10, 2025

    • q2-feature-table

      Public
      QIIME 2 plugin supporting operations on feature tables.
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •39•2•24•1•Updated Feb 7, 2025Feb 7, 2025

    • q2-deblur

      Public
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •22•2•7•1•Updated Feb 7, 2025Feb 7, 2025

    • q2-quality-control

      Public
      A QIIME 2 plugin for quality control of sequence and feature data
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •17•4•8•0•Updated Feb 7, 2025Feb 7, 2025

    • qiime2

      Public
      Official repository for the QIIME 2 framework.
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •241•496•69•6•Updated Feb 7, 2025Feb 7, 2025

    • q2-quality-filter

      Public
      Quality filtering for QIIME2
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •16•1•3•0•Updated Jan 29, 2025Jan 29, 2025

    • q2templates

      Public
      Design template package for QIIME 2 Plugins
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •15•4•0•0•Updated Jan 18, 2025Jan 18, 2025

    • q2galaxy

      Public
      Generate Galaxy tool descriptions automatically from QIIME 2 actions.
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •17•19•10•0•Updated Jan 18, 2025Jan 18, 2025

    • q2cli

      Public
      Command line interface for QIIME 2
      hacktoberfestq2interface
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •24•19•14•1•Updated Jan 18, 2025Jan 18, 2025

    • q2-vizard

      Public
      The first choice of wizard lizards for interactive, generalized microbiome data visualization!
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •9•1•6•1•Updated Jan 18, 2025Jan 18, 2025

    • q2-taxa

      Public
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •29•3•43•0•Updated Jan 18, 2025Jan 18, 2025

    • q2-stats

      Public
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •8•1•2•1•Updated Jan 18, 2025Jan 18, 2025

    • q2-sample-classifier

      Public
      QIIME 2 plugin for machine learning prediction of sample data.
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •36•6•15•0•Updated Jan 18, 2025Jan 18, 2025