Repositories list

• PIC-SURE-Frontend

  Public
  A frontend for the PIC-SURE API

  TypeScript

  •

  Apache License 2.0

  •0•1•0•9•Updated Apr 7, 2025Apr 7, 2025

• picsure-dictionary-etl

  Public
  Java

  •

  Apache License 2.0

  •0•0•0•0•Updated Apr 7, 2025Apr 7, 2025

• hypatio-app

  Public
  Python

  •0•4•0•7•Updated Apr 7, 2025Apr 7, 2025

• dbmi-fileservice

  Public
  Python

  •0•2•0•3•Updated Apr 7, 2025Apr 7, 2025

• fhirquestionnaire

  Public
  HTML

  •0•2•0•3•Updated Apr 7, 2025Apr 7, 2025

• dbmisvc-starter

  Public
  Python

  •0•1•0•3•Updated Apr 7, 2025Apr 7, 2025

• actions

  Public
  0•0•0•53•Updated Apr 7, 2025Apr 7, 2025

• gic-cumulus-infra

  Public
  Apache License 2.0

  •0•0•0•0•Updated Apr 6, 2025Apr 6, 2025

• i2b2v2-webclient

  Public
  JavaScript

  •4•2•1•3•Updated Apr 6, 2025Apr 6, 2025

• udi-dataset-review

  Public
  For reviewing the generated datasets.

  TypeScript

  •

  MIT License

  •1•0•0•1•Updated Apr 4, 2025Apr 4, 2025

• pic-sure-gic-common-frontend

  Public
  JavaScript

  •

  Apache License 2.0

  •3•0•0•10•Updated Apr 4, 2025Apr 4, 2025

• pic-sure-metadata-curation

  Public
  Parse and generate variable-level data to be exposed through the search interface.

  SAS

  •

  Apache License 2.0

  •2•2•0•0•Updated Apr 4, 2025Apr 4, 2025

• vizarr

  Public
  A minimal Zarr image viewer based on Viv.

  jupyter-notebooksgehlenborglabzarr+ 2vivimjoy

  TypeScript

  •

  MIT License

  •22•144•20•10•Updated Apr 4, 2025Apr 4, 2025

• viv

  Public
  Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.

  imagingome-tiffopenmicroscopy+ 4gehlenborglabzarrhubmapviv

  JavaScript

  •

  MIT License

  •48•303•50•10•Updated Apr 4, 2025Apr 4, 2025

• udi-grammar

  Public
  The Universal Discovery Interface Grammar.

  TypeScript

  •

  MIT License

  •1•2•0•4•Updated Apr 4, 2025Apr 4, 2025

• pic-sure-baseline-release-control

  Public
  5•0•0•0•Updated Apr 3, 2025Apr 3, 2025

• pic-sure-hpds

  Public
  Java

  •

  Apache License 2.0

  •6•3•0•1•Updated Apr 3, 2025Apr 3, 2025

• pic-sure-auth-microapp

  Public
  Java

  •

  Apache License 2.0

  •5•4•0•1•Updated Apr 3, 2025Apr 3, 2025

• LEAP

  Public
  Python

  •0•1•0•0•Updated Apr 3, 2025Apr 3, 2025

• pic-sure-bdc-release-control

  Public
  Apache License 2.0

  •8•1•0•0•Updated Apr 3, 2025Apr 3, 2025

• biodata_catalyst_stigmatizing_variables

  Public
  Jupyter Notebook

  •

  Apache License 2.0

  •0•1•0•1•Updated Apr 2, 2025Apr 2, 2025

• pic-sure-gic-institution-release-control

  Public
  Apache License 2.0

  •0•0•0•0•Updated Apr 2, 2025Apr 2, 2025

• pic-sure-all-in-one

  Public
  Shell

  •

  Apache License 2.0

  •12•4•0•1•Updated Apr 2, 2025Apr 2, 2025

• pic-sure-gic-institution-frontend

  Public
  JavaScript

  •

  Apache License 2.0

  •0•1•0•1•Updated Apr 2, 2025Apr 2, 2025

• chromoscope

  Public
  Interactive multiscale visualization for structural variation in human genomes

  TypeScript

  •

  MIT License

  •7•68•35•3•Updated Apr 1, 2025Apr 1, 2025

• udi-training-data

  Public
  code for generating training data used for fine-tuning the LLM

  Python

  •

  MIT License

  •0•0•0•0•Updated Mar 31, 2025Mar 31, 2025

• udi-grammar-py

  Public
  Python code for generating udi-grammar specifications.

  Python

  •

  MIT License

  •0•0•0•0•Updated Mar 31, 2025Mar 31, 2025

• ETLToolSuite-EntityGenerator

  Public
  This tool will generate Entity Files that can be used to load into Datasources.

  Java

  •

  Apache License 2.0

  •1•0•0•0•Updated Mar 31, 2025Mar 31, 2025

• anthro

  Public
  A Ruby gem for calculating anthropometric z-scores and percentiles based on the WHO and CDC 2000 growth chart data.

  Ruby

  •

  MIT License

  •0•0•0•0•Updated Mar 31, 2025Mar 31, 2025

• picsure-dictionary

  Public
  Java

  •

  Apache License 2.0

  •1•0•0•0•Updated Mar 28, 2025Mar 28, 2025