Repositories list

• BRS_survival

  Public
  Survival analysis with python

  Python

  •

  MIT License

  •1•0•0•0•Updated Oct 29, 2024Oct 29, 2024

• somatic_driver_discovery

  Public
  Nextflow

  •0•0•0•0•Updated Jul 31, 2024Jul 31, 2024

• LabkeyCohorts

  Public
  Java

  •0•0•0•0•Updated Jun 26, 2024Jun 26, 2024

• research-terminology-fhir-resources

  Public
  Java

  •0•0•0•0•Updated Apr 26, 2024Apr 26, 2024

• COVID19_GenOMICC_AVT_analysis

  Public
  Shell

  •1•1•0•0•Updated Mar 11, 2024Mar 11, 2024

• RETestFrameworkAPI

  Public
  Java

  •0•0•0•0•Updated Jan 26, 2024Jan 26, 2024

• RETestFrameworks

  Public
  Java

  •0•0•0•0•Updated Jan 23, 2024Jan 23, 2024

• agg_combininig_queries

  Public
  Nextflow

  •0•0•0•0•Updated Sep 22, 2023Sep 22, 2023

• pycipapi

  Public
  A client for the CIPAPI REST API

  Python

  •

  Apache License 2.0

  •0•2•1•1•Updated May 22, 2023May 22, 2023

• cloudos-nf-testing

  Public
  throwaway behaviour tests of cloudos nextflow

  rdp-tinkering

  Nextflow

  •0•0•0•0•Updated Apr 25, 2023Apr 25, 2023

• ACGS_GeL_API_workshop

  Public
  Repository of code for use in the ACGS-Gel Workshop

  pythonjupyter-notebookapi-wrapper

  Jupyter Notebook

  •

  MIT License

  •2•6•0•1•Updated Apr 20, 2023Apr 20, 2023

• ts-gelreportmodels

  Public
  GelReportModels TypeScript

  TypeScript

  •0•0•0•12•Updated Mar 4, 2023Mar 4, 2023

• GMSLabkey

  Public
  Java

  •0•0•0•0•Updated Feb 23, 2023Feb 23, 2023

• workflow_pc_hooks

  Public
  Pre-commit hooks for nextflow workflows

  Nextflow

  •0•0•0•0•Updated Jan 20, 2023Jan 20, 2023

• minimal_subset_genomic_dataset

  Public
  Minimal Nextflow pipeline to test genomic data processing in Cloud-RE

  Nextflow

  •1•1•0•0•Updated Jan 18, 2023Jan 18, 2023

• gms-consent-inspections

  Public
  Create JIRA tickets with GMS consent form snippets to check against data submitted by GLHs

  Python

  •0•0•0•4•Updated Dec 8, 2022Dec 8, 2022

• MFTGoanywhere

  Public
  Java

  •0•0•0•0•Updated Sep 15, 2022Sep 15, 2022

• re01_ticket_trending

  Public
  Python

  •

  MIT License

  •0•0•0•0•Updated Aug 25, 2022Aug 25, 2022

• patient-level-contract-monitoring

  Public
  Dataset used to monitor, at a sample level, the activity undertaken through the GMS pipeline. For submission to NHSE.

  Python

  •0•0•0•0•Updated Aug 24, 2022Aug 24, 2022

• gms_rr_data_dictionary

  Public
  Generate data dictionary for GMS research release

  Python

  •0•0•0•0•Updated Jul 20, 2022Jul 20, 2022

• gel-coverage

  Public
  Python

  •

  Apache License 2.0

  •0•2•5•3•Updated Jul 5, 2022Jul 5, 2022

• extract_single_participant_data

  Public
  Extract single participant's data from research release

  R

  •0•0•0•0•Updated Apr 21, 2022Apr 21, 2022

• rr_participant_list

  Public
  Query to generate the participant list for 100k research releases

  0•0•0•0•Updated Mar 17, 2022Mar 17, 2022

• BRS_ICD10_extract_and_parse

  Public
  Extract and parse ICD10 data from Electronic Health Records

  R

  •

  MIT License

  •1•0•0•0•Updated Mar 14, 2022Mar 14, 2022

• gel_data_diversity_language_toolkit

  Public
  0•0•0•0•Updated Mar 7, 2022Mar 7, 2022

• gel_cohort_overlap

  Public
  Python

  •0•2•0•0•Updated Jan 11, 2022Jan 11, 2022

• Inuvika

  Public
  Java

  •0•0•0•0•Updated Oct 26, 2021Oct 26, 2021

• JuLI

  Public
  Junction Location Identifier (JuLI): DNA fusion detection tool for clinical sequencing.

  R

  •

  GNU General Public License v3.0

  •5•0•0•0•Updated Sep 20, 2021Sep 20, 2021

• rmd2conf

  Public
  script to export md or rmd to confluence

  Python

  •0•1•0•0•Updated Sep 9, 2021Sep 9, 2021

• dbs-custom-cohorts

  Public
  Python

  •0•0•0•0•Updated Jul 23, 2021Jul 23, 2021