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    50 repositories

    • Cytomine-java-client

      Public
      Cytomine Java client
      Java
      •
      Apache License 2.0
      •14•12•4•1•Updated Oct 3, 2024Oct 3, 2024

    • S_Segment-ML-MultiOutputET-Pred-BI

      Public
      Software that uses a binary segmentation model based on subwindow and multiple output extra-trees to segment an image
      Python
      •4•0•4•0•Updated Jul 23, 2024Jul 23, 2024

    • S_Segment-ML-MultiOutputET-Train

      Public
      Train a binary segmentation model based on subwindow and multiple output extra-trees
      Python
      •
      Apache License 2.0
      •3•0•4•0•Updated Jul 23, 2024Jul 23, 2024

    • S_CellDetect_Stardist_HE_ROI

      Public
      Cell (Nuclei) Detection in ROI using Stardist
      Python
      •
      Apache License 2.0
      •13•1•1•0•Updated Jul 23, 2024Jul 23, 2024

    • Cytomine-installer

      Public
      Python
      •
      Apache License 2.0
      •3•1•1•0•Updated Jul 19, 2024Jul 19, 2024

    • Cytomine-postgis

      Public
      Shell
      •
      Apache License 2.0
      •3•0•0•0•Updated May 28, 2024May 28, 2024

    • Cytomine-core-spring

      Public
      Java
      •7•2•1•1•Updated May 7, 2024May 7, 2024

    • Cytomine-python-client

      Public
      Cytomine client and utilities in Python
      Python
      •
      Apache License 2.0
      •19•23•10•4•Updated Apr 23, 2024Apr 23, 2024

    • registry-client

      Public
      A java client for docker registry api v2
      Java
      •
      Apache License 2.0
      •4•0•0•0•Updated Apr 16, 2024Apr 16, 2024

    • Cytomine-nginx

      Public
      Dockerfile
      •
      Apache License 2.0
      •3•0•0•0•Updated Apr 15, 2024Apr 15, 2024

    • Cytomine-community-edition

      Public
      Cytomine Community Edition
      Shell
      •
      Apache License 2.0
      •7•16•5•0•Updated Mar 29, 2024Mar 29, 2024

    • helm-charts

      Public
      0•0•0•0•Updated Mar 12, 2024Mar 12, 2024

    • Cytomine-docker-entrypoint-scripts

      Public
      Shell
      •
      Apache License 2.0
      •3•0•0•0•Updated Feb 20, 2024Feb 20, 2024

    • Cytomine-Web-UI

      Public
      The Cytomine-WebUI is the official front-end for Cytomine, developed in VueJS. You will find more information about the Cytomine project on our website.
      Vue
      •
      Apache License 2.0
      •23•20•17•17•Updated Feb 13, 2024Feb 13, 2024

    • pims-plugin-format-dicom

      Public
      Python
      •
      GNU Lesser General Public License v2.1
      •5•0•1•1•Updated Feb 12, 2024Feb 12, 2024

    • pims-plugin-format-openslide

      Public
      Python
      •
      GNU Lesser General Public License v2.1
      •5•0•0•0•Updated Feb 12, 2024Feb 12, 2024

    • openslide

      Public
      C library for reading virtual slide images
      C
      •
      Other
      •226•0•0•0•Updated Feb 12, 2024Feb 12, 2024

    • pims

      Public
      Python Image Management Server
      Python
      •
      Apache License 2.0
      •8•2•3•0•Updated Oct 26, 2023Oct 26, 2023

    • Cytomine-software-router

      Public
      Cytomine module for communication between Cytomine-Core and remote algorithms
      Groovy
      •
      Apache License 2.0
      •9•5•9•5•Updated Oct 24, 2023Oct 24, 2023

    • Cytomine-js-client

      Public
      Cytomine javascript client
      JavaScript
      •
      Apache License 2.0
      •9•2•0•10•Updated Jul 3, 2023Jul 3, 2023

    • pims-plugin-format-bioformats

      Public
      Python
      •
      Apache License 2.0
      •4•0•0•0•Updated May 19, 2023May 19, 2023

    • Cytomine-bootstrap

      Public
      Cytomine Community Edition Legacy
      Shell
      •
      Apache License 2.0
      •29•35•17•0•Updated May 17, 2023May 17, 2023

    • Cytomine-core

      Public
      Cytomine-Core is the main web server implementing the Cytomine API
      digital-pathologywhole-slide-imagingcomputational-pathologycytominemachine-learning
      Groovy
      •
      Apache License 2.0
      •31•70•71•1•Updated Feb 24, 2023Feb 24, 2023

    • S_Segment-CV-AdaptThres-Sample

      Public
      Cytomine software. Segmentation by computer vision using an adaptive threshold on a sample
      Python
      •
      Apache License 2.0
      •2•1•1•0•Updated Nov 3, 2022Nov 3, 2022

    • Cytomine-BioFormats

      Public
      Groovy
      •
      GNU General Public License v2.0
      •6•0•0•0•Updated Apr 30, 2022Apr 30, 2022

    • conventional-commits-git-hook

      Public
      A configurable Git hook for adhering to the Conventional Commit specification
      Shell
      •
      MIT License
      •29•0•0•0•Updated Apr 27, 2022Apr 27, 2022

    • S_Classify-ML-Cervical-Biopsies-Lesions

      Public
      Classify microscopic slides of uterine cervical according to the most severe category of epithelial lesion present in the sample.
      Python
      •2•0•0•0•Updated Apr 1, 2022Apr 1, 2022

    • Cytomine-IMS

      Public
      Cytomine-IMS: Image Management System
      Groovy
      •
      GNU Lesser General Public License v2.1
      •16•14•10•1•Updated Mar 29, 2022Mar 29, 2022

    • Dockerfiles

      Public
      Dockerfiles used to compile Cytomine docker images
      PLpgSQL
      •
      Apache License 2.0
      •8•7•7•0•Updated Mar 22, 2022Mar 22, 2022

    • wsidicomizer

      Public
      Python library for converting files wsi files to dicom using opentile or openslide.
      Python
      •
      Apache License 2.0
      •8•1•0•0•Updated Feb 14, 2022Feb 14, 2022