{"payload":{"pageCount":2,"repositories":[{"type":"Public","name":"QuantumGRN","owner":"cailab-tamu","isFork":false,"description":"Quantum Gene Regulatory Networks with Application to Single-cell Data","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":17,"forksCount":8,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-03T03:28:12.517Z"}},{"type":"Public","name":"cailab-tamu.github.io","owner":"cailab-tamu","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":[1,0,5,5,2,3,0,2,0,0,1,0,2,6,0,1,0,0,0,0,0,1,3,0,2,0,2,0,0,0,1,0,0,0,2,2,0,0,0,0,0,0,2,5,4,0,3,0,5,0,1,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-09-02T06:00:37.076Z"}},{"type":"Public","name":"QUBO_Feature_Selection","owner":"cailab-tamu","isFork":false,"description":"Feature Selection QUBO (Quadratic Unconstrained Binary Optimization)","allTopics":[],"primaryLanguage":{"name":"MATLAB","color":"#e16737"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":2,"license":null,"participation":[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3,15,10,10,0,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-29T21:35:38.349Z"}},{"type":"Public","name":"scTenifoldXct","owner":"cailab-tamu","isFork":false,"description":"Manifold learning to detect cell-cell interactions.","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":2,"starsCount":4,"forksCount":2,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-08-29T21:30:24.431Z"}},{"type":"Public","name":"Spline-DV","owner":"cailab-tamu","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"MATLAB","color":"#e16737"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13,0,0,0,0,0,0,0,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-07-17T17:31:04.583Z"}},{"type":"Public","name":"GenKI","owner":"cailab-tamu","isFork":true,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":8,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-17T20:58:10.954Z"}},{"type":"Public","name":"Matlab-GAN","owner":"cailab-tamu","isFork":true,"description":"MATLAB implementations of Generative Adversarial Networks -- from GAN to Pixel2Pixel, CycleGAN","allTopics":[],"primaryLanguage":{"name":"MATLAB","color":"#e16737"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":85,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-03-22T20:45:18.213Z"}},{"type":"Public","name":"scTenifoldKnk","owner":"cailab-tamu","isFork":false,"description":" R/MATLAB package to perform virtual knockout experiments on single-cell gene regulatory networks.","allTopics":["functional-genomics","gene-regulatory-network","gene-function","gene-knockout","virtual-knockout-experiments"],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":15,"starsCount":36,"forksCount":6,"license":null,"participation":[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-08-02T20:48:55.210Z"}},{"type":"Public","name":"scTenifoldNet","owner":"cailab-tamu","isFork":false,"description":"A R/MATLAB package to construct and compare gene regulatory networks from single-cell transcriptomic data","allTopics":["single-cell","gene-regulatory-networks","tensor-decomposition","manifold-alignment","differential-regulation-analysis"],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":3,"starsCount":21,"forksCount":4,"license":null,"participation":[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-08-02T20:48:26.890Z"}},{"type":"Public","name":"sm-scTenifoldNet","owner":"cailab-tamu","isFork":false,"description":"Support material for \"scTenifoldNet: A Machine Learning Workflow for Constructing and Comparing Transcriptome-wide Gene Regulatory Networks from Single-Cell Data\"","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-05-09T13:25:06.870Z"}},{"type":"Public","name":"covid19-antimalarials-letter","owner":"cailab-tamu","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"MATLAB","color":"#e16737"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-04-09T03:45:39.455Z"}},{"type":"Public","name":"scInTime","owner":"cailab-tamu","isFork":false,"description":"","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-02-04T17:40:01.989Z"}},{"type":"Public","name":"MATLAB_Kauffman_NK_Random_Boolean_Network","owner":"cailab-tamu","isFork":true,"description":"The initial version of this is entirely thanks to the work of Christof Teuscher (<a href=\"http://www.teuscher.ch/christof/ext/\" rel=\"nofollow\">http://www.teuscher.ch/christof/ext/</a>), who created the original Matlab Random Boolean Network Toolbox (<a href=\"http://www.teuscher.ch/rbntoolbox/\" rel=\"nofollow\">http://www.teuscher.ch/rbntoolbox/</a>). The only changes made so far are to make the toolbox compatible with r2015a. Refer to the Toolbox site for additional overview…","allTopics":[],"primaryLanguage":{"name":"Mathematica","color":"#dd1100"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":2,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-09-04T16:16:33.613Z"}},{"type":"Public","name":"awesome-single-cell","owner":"cailab-tamu","isFork":true,"description":"Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":963,"license":"MIT License","participation":[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-06-11T06:17:16.468Z"}},{"type":"Public","name":"ebvMultiOmics","owner":"cailab-tamu","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"MATLAB","color":"#e16737"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-03-31T18:45:57.059Z"}},{"type":"Public","name":"SCZ_GE_Dispersion","owner":"cailab-tamu","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"MATLAB","color":"#e16737"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":null,"participation":[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2020-09-16T03:09:50.654Z"}},{"type":"Public","name":"covid19-malaria-letter","owner":"cailab-tamu","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"MATLAB","color":"#e16737"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2020-07-13T04:45:58.158Z"}},{"type":"Public","name":"scTypeGSEA","owner":"cailab-tamu","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":6,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2020-07-11T02:43:47.168Z"}},{"type":"Public","name":"sciData-LCL","owner":"cailab-tamu","isFork":false,"description":"Supporting information of 'Single-cell RNA sequencing of a European and an African lymphoblastoid cell line'","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":2,"starsCount":10,"forksCount":1,"license":null,"participation":[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2020-02-27T14:14:49.392Z"}},{"type":"Public","name":"mtContent","owner":"cailab-tamu","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2020-02-12T22:38:08.843Z"}},{"type":"Public","name":"schwannCompilation","owner":"cailab-tamu","isFork":false,"description":"","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2019-12-17T21:58:14.612Z"}},{"type":"Public","name":"metaHVG","owner":"cailab-tamu","isFork":false,"description":"","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2019-12-10T21:31:47.401Z"}},{"type":"Public","name":"HVG","owner":"cailab-tamu","isFork":false,"description":"Supporting information for 'Single-cell expression variability implies cell function'","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":2,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2019-11-30T23:12:23.695Z"}},{"type":"Public","name":"Single-Cell-Analyses-Course","owner":"cailab-tamu","isFork":false,"description":"github site for VIBS-689 Special Topics in Single Cell Analyses","allTopics":[],"primaryLanguage":{"name":"C","color":"#555555"},"pullRequestCount":0,"issueCount":0,"starsCount":2,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2019-07-30T20:25:19.654Z"}},{"type":"Public","name":"LCL_scRNA-seq","owner":"cailab-tamu","isFork":false,"description":"scRNA-seq with LCLs - Three cell line samples sequenced: (1) GM12878, (2) GM18502, and (3) the 1:1 mixture of the two","allTopics":[],"primaryLanguage":{"name":"MATLAB","color":"#e16737"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2019-03-23T05:28:14.347Z"}},{"type":"Public","name":"LRSMA","owner":"cailab-tamu","isFork":false,"description":"Low-rank Sparse Matrix Approximation for ChIP-Seq Consensus Peak Detection","allTopics":[],"primaryLanguage":{"name":"C++","color":"#f34b7d"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2018-05-21T01:27:35.191Z"}},{"type":"Public","name":"SKATr2matlab","owner":"cailab-tamu","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2018-03-09T16:21:25.935Z"}},{"type":"Public","name":"blueprint_data","owner":"cailab-tamu","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"MATLAB","color":"#e16737"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2017-11-21T16:23:07.135Z"}},{"type":"Public","name":"RNA-SeqAnalysis","owner":"cailab-tamu","isFork":false,"description":"","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2017-11-02T15:51:55.168Z"}},{"type":"Public","name":"ConsensusPeaks","owner":"cailab-tamu","isFork":false,"description":"Calling Consensus Peaks","allTopics":[],"primaryLanguage":{"name":"Shell","color":"#89e051"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2017-10-31T20:58:45.434Z"}}],"repositoryCount":31,"userInfo":null,"searchable":true,"definitions":[],"typeFilters":[{"id":"all","text":"All"},{"id":"public","text":"Public"},{"id":"source","text":"Sources"},{"id":"fork","text":"Forks"},{"id":"archived","text":"Archived"},{"id":"template","text":"Templates"}],"compactMode":false},"title":"cailab-tamu repositories"}