Repositories list

• extract_sequence_range

  Public
  A script that provides several options for extracting a range of characters from a FASTA file

  Python

  •1•0•0•0•Updated May 18, 2022May 18, 2022

• Viral_Classification_in_Metagenomics

  Public
  This repository contains the data and scripts used in Simulation Study of Viral Contiguous Sequence Identification Tools

  machine-learningmetagenomicsviral+ 2phageviral-metagenomics

  Jupyter Notebook

  •

  MIT License

  •1•1•0•0•Updated Dec 7, 2021Dec 7, 2021

• GISAID_Pipeline_Functions

  Public
  Scripts used to determine variants in SARS-CoV-2 Sequences from the Global Sharing of All Influenza Data (GISAID) database.

  Python

  •1•0•0•0•Updated Nov 21, 2021Nov 21, 2021

• Phybrid

  Public
  A hybrid gene content and k-mer feature viral metagenomic contig identifier

  Jupyter Notebook

  •

  MIT License

  •1•3•0•0•Updated Jun 3, 2021Jun 3, 2021

• Prophage_in_NTM

  Public
  This repository contains the data and methods for characterization of integrated prophages within different species of clinical non-tuberculous mycobacterial genomes

  virulence-factormycobacteriumprophages+ 3ntmprophageintegrated-prophages

  Jupyter Notebook

  •

  MIT License

  •0•1•0•0•Updated Dec 16, 2020Dec 16, 2020

• VirBrant

  Public
  Jupyter Notebook

  •

  MIT License

  •2•3•0•0•Updated Dec 12, 2020Dec 12, 2020

• VirKraken

  Public
  Kraken extension to identify viral contigs

  Python

  •

  MIT License

  •1•10•2•0•Updated Dec 4, 2020Dec 4, 2020

• bioconda-recipes

  Public
  Conda recipes for the bioconda channel.

  Shell

  •3.3k•0•0•0•Updated Sep 30, 2020Sep 30, 2020

• wiki

  Public
  How to's

  0•0•0•0•Updated May 29, 2020May 29, 2020

• NTM_Soil

  Public
  Jupyter Notebook

  •

  MIT License

  •0•0•0•0•Updated Apr 6, 2020Apr 6, 2020

• public

  Public
  0•0•0•0•Updated Jan 18, 2019Jan 18, 2019