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    38 repositories

    • glider-utils

      Public
      Utility functions for ESD glider processing
      glidersswfsc-esd
      Jupyter Notebook
      •
      Apache License 2.0
      •0•1•5•0•Updated Apr 5, 2025Apr 5, 2025

    • glider-lab

      Public
      A repo for the Project of ESD Gliders
      swfsc-esd
      Python
      •
      Creative Commons Zero v1.0 Universal
      •0•1•42•0•Updated Apr 5, 2025Apr 5, 2025

    • glider_processing_code

      Public
      US AMLR glider processing code
      acousticsglidersswfsc-esd
      MATLAB
      •0•0•0•0•Updated Apr 4, 2025Apr 4, 2025

    • swfscMisc

      Public
      Collection of utility, analytical, mapping, and plotting functions used at the Southwest Fisheries Science Center.
      R
      •1•2•0•0•Updated Apr 1, 2025Apr 1, 2025

    • SardineRecruitIndex

      Public
      Development of a recruitment index for the northern stock of Pacific sardine
      HTML
      •
      Creative Commons Zero v1.0 Universal
      •1•0•12•0•Updated Mar 27, 2025Mar 27, 2025

    • atm

      Public
      A collection of functions used to conduct acoustic-trawl method surveys of coastal pelagic fish species (CPS), analyze the data, and report the results.
      R
      •
      Other
      •0•3•2•0•Updated Mar 27, 2025Mar 27, 2025

    • swfscGenetics

      Public
      Miscellaneous scripts for processing genetic/genomic data
      0•0•0•0•Updated Mar 26, 2025Mar 26, 2025

    • sprex

      Public
      Calculate species richness functions for rarefaction and extrapolation
      R
      •2•1•0•0•Updated Mar 25, 2025Mar 25, 2025

    • rfPermute

      Public
      Estimate Permutation p-Values for Random Forest Importance Metrics
      HTML
      •2•27•0•0•Updated Mar 25, 2025Mar 25, 2025

    • glider-lab-manual

      Public
      Quarto website for ESD glider lab
      glidersswfsc-esd
      Lua
      •
      Creative Commons Zero v1.0 Universal
      •0•2•2•0•Updated Mar 20, 2025Mar 20, 2025

    • swfscDAS

      Public
      R package for processing and analyzing DAS data
      R
      •
      Apache License 2.0
      •0•4•3•0•Updated Mar 15, 2025Mar 15, 2025

    • MSI-data

      Public
      0•0•0•0•Updated Mar 12, 2025Mar 12, 2025

    • standard-glider-files

      Public
      Standard files that are put on all gliders before deployment
      glidersswfsc-esd
      Mathematica
      •0•0•0•0•Updated Mar 3, 2025Mar 3, 2025

    • slocumRtDataVisTool

      Public
      Creates plots and generates useful statistics from slocum binary files.
      Python
      •1•0•0•0•Updated Mar 3, 2025Mar 3, 2025

    • Casal2-krill-model

      Public
      Casal2 krill model example for Antarctic krill in the combined U.S. AMLR strata in CCAMLR Subarea 48.1
      us-amlrswfsc-esd-usamlr
      0•0•0•0•Updated Feb 28, 2025Feb 28, 2025

    • ADMB-krill-spawner-recruit

      Public
      ADMB and R code used in Kinzey et al., 2019
      us-amlrswfsc-esd-usamlr
      Smarty
      •1•0•0•0•Updated Feb 28, 2025Feb 28, 2025

    • ADMB-mcmc

      Public
      Example MCMC using ADMB code and krill data from Kinzey et al., 2018
      us-amlrswfsc-esd-usamlr
      Smarty
      •1•0•0•0•Updated Feb 28, 2025Feb 28, 2025

    • glider-simulation

      Public
      Simulated underwater glider sampling for Antarctic krill
      us-amlrswfsc-esd-usamlr
      R
      •1•0•0•0•Updated Feb 28, 2025Feb 28, 2025

    • surveyR

      Public
      A package containing functions used by the Advanced Survey Technologies group at NOAA's Southwest Fisheries Science Center.
      R
      •
      Other
      •0•0•0•0•Updated Dec 19, 2024Dec 19, 2024

    • SeriousInjury

      Public
      Classify Whale Injuries as Serious or Non-Serious with Classification Trees. https://www.frontiersin.org/articles/10.3389/fmars.2022.863070
      R
      •
      Other
      •0•2•0•0•Updated Nov 21, 2024Nov 21, 2024

    • viame-web-noaa-gcp

      Public
      Deploy an instance of VIAME-Web in GCP in the NOAA Fisheries Cloud
      Shell
      •
      Other
      •1•5•6•0•Updated Nov 5, 2024Nov 5, 2024

    • sardine_otolith_sampling_analysis

      Public
      data and analysis used in the manuscript on post-survey otolith subsampling strategies on Pacific Sardine
      0•0•0•0•Updated Oct 16, 2024Oct 16, 2024

    • eSDM

      Public
      A user-friendly spatial tool with a web-based interface that allows users to import SDM layers and create and explore ensemble predictions to inform management and explore spatial uncertainties
      R
      •
      Apache License 2.0
      •4•11•4•0•Updated Oct 7, 2024Oct 7, 2024

    • swfscAirDAS

      Public
      Functions for processing and analyzing aerial survey DAS data generated by the TURTLE, PHOCOENA, and CARETTA programs at the Southwest Fisheries Science Center
      R
      •
      Apache License 2.0
      •0•0•0•0•Updated Oct 3, 2024Oct 3, 2024

    • eSDM-data

      Public
      Home for data that can be downloaded and used in the eSDM GUI
      Creative Commons Zero v1.0 Universal
      •0•2•0•0•Updated Oct 2, 2024Oct 2, 2024

    • CruzPlot

      Public
      CruzPlot is is a utility program oriented to create maps and plot data from data files in the "DAS" format, typically produced by WinCruz.
      R
      •
      Apache License 2.0
      •1•2•3•0•Updated Sep 24, 2024Sep 24, 2024

    • SWFSC-Template

      Public template
      SWFSC Repo Template
      1•0•0•0•Updated Aug 23, 2024Aug 23, 2024

    • DGNBycatch

      Public
      0•0•0•0•Updated Jun 3, 2024Jun 3, 2024

    • .github

      Public
      0•0•0•0•Updated Apr 25, 2024Apr 25, 2024

    • openscience

      Public
      SWFSC Openscience resource page
      0•0•0•0•Updated Apr 5, 2024Apr 5, 2024