RNA-FRETools

All

12 repositories

MASH-FRET
Public
MATLAB package to analyze single-molecule FRET data
single-molecule fluorescence fret simulation matlab
MATLAB
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GNU General Public License v3.0
•3•8•5•0•Updated Mar 21, 2025Mar 21, 2025
fretraj
Public
PyMOL plugin to calculate accessible contact volumes on PDB structures
Python
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GNU General Public License v3.0
•2•9•0•0•Updated Mar 17, 2025Mar 17, 2025
fretlabel
Public
Nucleic acid fluorescence labeling for all-atom MD simulations
simulation dynamics labeling gromacs fret dye forcefield fluorophore
Python
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GNU General Public License v3.0
•1•5•0•0•Updated Mar 16, 2025Mar 16, 2025
Lifefit
Public
Analyze fluorescence lifetime and anisotropy decays.
fluorescence spectroscopy lifetime anisotropy tcspc
Python
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MIT License
•3•8•0•0•Updated Feb 22, 2025Feb 22, 2025
PAMtools
Public
Helper functions for the PAM software
Python
•
MIT License
•0•0•0•0•Updated Jan 3, 2025Jan 3, 2025
hplc2spect
Public
Analysis of 2D HPLC chromatograms
MATLAB
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MIT License
•1•0•0•0•Updated Jan 2, 2025Jan 2, 2025
just-the-docs
Public
A modern, high customizable, responsive Jekyll theme for documention with built-in search.
CSS
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MIT License
•3.7k•0•0•1•Updated Aug 20, 2024Aug 20, 2024
Steffen-Bioinformatics-2021
Public
Analysis of DNA hairpin dynamics with FRETraj
GNU General Public License v3.0
•0•2•2•0•Updated Jul 14, 2024Jul 14, 2024
rna-fretools.github.io
Public
Single-moecule imaging and computation with RNA
single-molecule molecular-dynamics microscopy imaging spectroscopy fret
1•1•0•0•Updated Jul 13, 2024Jul 13, 2024
Steffen_NucleicAcidsResearch_2024
Public
De novo models of a manganese riboswitch using Rosetta's FARFAR2
Python
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MIT License
•0•0•0•0•Updated Jul 13, 2024Jul 13, 2024
rosettascripts
Public
Setup and running scripts for RNA modeling with Rosetta
pdb rna rosetta molecular-modeling
Python
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MIT License
•0•1•0•0•Updated Apr 12, 2024Apr 12, 2024
.github
Public
0•0•0•0•Updated Feb 6, 2022Feb 6, 2022