diff --git a/src/datasets/resource_test_scripts/multimodal.sh b/src/datasets/resource_test_scripts/multimodal.sh index 5189af4ffe..f39ac9a037 100644 --- a/src/datasets/resource_test_scripts/multimodal.sh +++ b/src/datasets/resource_test_scripts/multimodal.sh @@ -1,7 +1,7 @@ #!/bin/bash # #make sure the following command has been executed -#viash_build -q 'label_projection|common' +#viash ns build -q 'datasets|common' --parallel --setup cb # get the root of the directory REPO_ROOT=$(git rev-parse --show-toplevel) @@ -30,9 +30,6 @@ viash run src/datasets/loaders/openproblems_v1_multimodal/config.vsh.yaml -- \ --output_mod1 $DATASET_DIR/temp_mod1_full.h5ad \ --output_mod2 $DATASET_DIR/temp_mod2_full.h5ad -# wget https://raw.githubusercontent.com/theislab/scib/c993ffd9ccc84ae0b1681928722ed21985fb91d1/scib/resources/g2m_genes_tirosh_hm.txt -O $DATASET_DIR/temp_g2m_genes_tirosh_hm.txt -# wget https://raw.githubusercontent.com/theislab/scib/c993ffd9ccc84ae0b1681928722ed21985fb91d1/scib/resources/s_genes_tirosh_hm.txt -O $DATASET_DIR/temp_s_genes_tirosh_hm.txt -# KEEP_FEATURES=`cat $DATASET_DIR/temp_g2m_genes_tirosh_hm.txt $DATASET_DIR/temp_s_genes_tirosh_hm.txt | paste -sd ":" -` # subsample viash run src/datasets/processors/subsample/config.vsh.yaml -- \