Cargo.toml

[package]
name = "needletail"
version = "0.6.0"
authors = ["Roderick Bovee <rbovee@gmail.com>", "Vincent Prouillet <vincent@onecodex.com>"]
description = "FASTX parsing and k-mer methods"
keywords = ["FASTA", "FASTQ", "kmer", "bioinformatics"]
categories = ["science", "parsing"]
repository = "https://github.com/onecodex/needletail"
license = "MIT"
readme = "./README.md"
edition = "2021"
include = ["src/**/*", "tests/**/*", "LICENSE", "README.md", "CHANGELOG.md"]

[lib]
crate-type = ["cdylib", "rlib"]
bench = false

[features]
default = ["compression"]
compression = ["bzip2", "flate2", "xz2", "zstd"]
python = ["pyo3/extension-module"]
python_test = ["pyo3"]
xz2 = ["liblzma"]

[dependencies]
buffer-redux = { version = "1", default-features = false }
bytecount = { version = "0.6", features = ["runtime-dispatch-simd"] }
bzip2 = { version = "0.4", optional = true }
flate2 = { version = "1.0.30", optional = true }
memchr = "2.7.2"
pyo3 = { version = "0.21.2", optional = true }
liblzma = { version = "0.3.1", optional = true }
zstd = { version = "0.13.2", optional = true }

[dev-dependencies]
criterion = "0.5"

# for stdin test
assert_cmd = "2"
escargot = "0.5.0"
predicates = "3"
tempfile = "3"

# for benchmark comparisons
bio = "1"
seq_io = "0.3"

# for testing with the FormatSpecimens.jl repo samples
serde = "1.0"
serde_derive = "1.0"
toml = "0.8"

[profile.release]
lto = true

[[bench]]
name = "benchmark"
harness = false
path = "benches/benchmark.rs"