0.12.0

Release Notes

New feature release in the 0.12.x series.

This release adds ANTs DenoiseImage to T1w and T2w preprocessing, improving signal-to-noise ratio. Surface processing now produces a registration sphere to permit directly resampling data from T1w space to fsLR.

What's Changed

• FIX: Query templateflow files to see if resolution is available by @mgxd in #336
• ENH: Use ANTs DenoiseImage before conforming anatomical images by @effigies in #337
• ENH: Project fsLR mesh onto native sphere to enable single-shot resampling into fsLR by @effigies in #339
• DOC: Add security fix to vendored jquery by @mgxd in #332
• MNT: Loosen niworkflow restriction by @mgxd in #335
• CI: Prioritize tags on release by @mgxd in #331
• CI: Fix codecov in CircleCI, remove Travis config by @effigies in #333
• MNT: Add sloppy argument to workflows, distinguish from debug by @mgxd in #344

Full Changelog: 0.11.1...0.12.0

0.11.1

Release Notes

Bug-fix release in the 0.11.1 series.

This release changes the default name of a workflow. This change modifies the workflow structure superficially, but in such a way that reusing a working directory should present no possibility of error.

What's Changed

• RF: Reflect function name on nipype workflow by @mgxd in #328
• DOC: Update boilerplate generation with TemplateFlow reference by @oesteban in #329

Full Changelog: 0.11.0...0.11.1

0.11.0

Release Notes

New feature release in the 0.11.x series.

This series supports fMRIPrep 23.0.x and nibabies 23.1.x.

This release drops support for Python 3.7.

What's Changed

• ENH: Enable resampling morphometrics to fsLR CIFTI-2 files (#325)
• ENH: Add cortical ribbon workflow (#322)
• ENH: Merge T2w images and coregister to T1w template (#319)
• MAINT: Rotate CircleCI secrets and setup up org-level context (#315)
• CI: Update build to match fMRIPrep (#323)

Full Changelog: 0.10.0...0.11.0

0.10.0

Release Notes

New feature release in the 0.10.x series.

This series supports fMRIPrep 22.1.x and Nibabies 22.2.x.

This will be the last series to support Python 3.7.

Changes

• FIX: Expand surfaces pattern to allow morphometrics (#312)
• ENH: Bind FreeSurfer subjects directory (#311)
• ENH: Output thickness, curvature, and sulcal depth files (#305)
• WRAPPER: Update patch location, use --patch syntax (#309)
• CI: Fix expected ds054 outputs (#310)
• CI: Set max Python version to 3.10 (#308)
• CI: Simplify actions to build once, test many (#304)
• CI: Update CircleCI docker orb (#302)

Full Changelog: 0.9.2...0.10.0

0.9.2

What's Changed

• FIX: Use mris_convert --to-scanner, and update normalization step by @ericfeczko and @effigies in #295

Full Changelog: 0.9.1...0.9.2

0.9.1

What's Changed

• FIX: Re-add fsr-checkxopts to Docker image by @effigies in #287
• FIX: Re-add missing getfullpath FreeSurfer binary by @mgxd in #290
• FIX: Disable -T2pial and -FLAIRpial at -autorecon1 stage by @effigies in #291

Full Changelog: 0.9.0...0.9.1

0.9.0

What's Changed

• FIX: Override nipype handling of recon-all hemi input by @effigies in #282
• DOC: Fix build by @effigies in #283
• DOCKER: Bundle FreeSurfer 7.2 by @effigies in #281

Full Changelog: 0.8.3...0.9.0

0.8.3

Release Notes

Patch release in the 0.8.x series. This allows compatibility with the next minor release of niworkflows.

What's Changed

• DOC: update scipy url by @mgxd in #276
• MAINT: Allow compatibility with new niworkflows minor by @mgxd in #277

Full Changelog: 0.8.2...0.8.3

0.8.2

Release Notes

This release includes some minor formatting fixes to the generated workflow boilerplate.
Additionally, the Docker image environment was updated.

Changes

• DOCKER: Update Dockerfile to match fMRIPrep, using FSL 6 (#274)
• FIX: Generated boilerplate formatting (#275)

0.8.1

Release Notes

Bug-fix release in the 0.8.x series.

All releases since 0.5.3 have incorrectly resampled the (aparc+)aseg segmentations with trilinear interpolation, rather than nearest-neighbor. This fix has also been applied in 0.7.2, to provide a fix in the fMRIPrep LTS series.

Changes

• FIX: Resample aseg with nearest-neighbor interpolation (#268)