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MTB_Resistance_Mediating.txt
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#Variant position genome start Variant position genome stop Var. type Number WT base Var. base Region Gene ID Gene Name Gene start Gene stop Gene length Dir. WT AA Codon nr. Codon nr. E. coli Var. AA AA change Codon change Variant position gene start Variant position gene stop Antibiotic Reference PMID High Confidence SNP Comment
2715346 2715346 SNP 1 C T PROM Rv2416c eis 2715332 2714124 1208 - - - - - -14c>t -14c>t -14 -14 amikacin (AMK) kanamycin (KAN) capreomycin (CPR) WHO2018 - low AMI MIC increase, moderate KAN MIC increase (WHO)
1473246 1473246 SNP 1 A G RNA Rvnr01 rrs 1471846 1473382 1536 + - - - - 1401a>g 1401a>g 1401 1401 amikacin (AMK) kanamycin (KAN) capreomycin (CPR) WHO2018 - moderate CAP MIC increase (WHO)
1473247 1473247 SNP 1 C T RNA Rvnr01 rrs 1471846 1473382 1536 + - - - - 1402c>t 1402c>t 1402 1402 amikacin (AMK) kanamycin (KAN) capreomycin (CPR) WHO2018 - low AMI and KAN MIC increase (WHO)
1473329 1473329 SNP 1 G T RNA Rvnr01 rrs 1471846 1473382 1536 + - - - - 1484g>t 1484g>t 1484 1484 amikacin (AMK) kanamycin (KAN) capreomycin (CPR) WHO2018 - -
1473329 1473329 SNP 1 G A RNA Rvnr01 rrs 1471846 1473382 1536 + - - - - 1484g>a 1484g>a 1484 1484 amikacin (AMK) kanamycin (KAN) capreomycin (CPR) WHO2021 yes -
778994 778994 SNP 1 G T CDS Rv0678 Rv0678 778990 779487 497 + Ser 2 - Ile Ser2Ile agc/atc 5 5 bedaquiline (BDQ) Xu et al doi:10.1128/AAC.00239-17 - consider low CFZ MIC increase
779045 779045 SNP 1 T C CDS Rv0678 Rv0678 778990 779487 497 + Phe 19 - Ser Phe19Ser ttc/tcc 56 56 bedaquiline (BDQ) CRyPTIC - consider CFZ-R (no support)
779052 779052 SNP 1 A C CDS Rv0678 Rv0678 778990 779487 497 + Glu 21 - Asp Glu21Asp gaa/gac 63 63 bedaquiline (BDQ) Ismail et al doi: 10.1016/j.mimet.2018.08.011 - consider CFZ-R (no support)
779052 779052 SNP 1 A T CDS Rv0678 Rv0678 778990 779487 497 + Glu 21 - Asp Glu21Asp gaa/gat 63 63 bedaquiline (BDQ) Ismail et al doi: 10.1016/j.mimet.2018.08.011 - consider CFZ-R (no support)
779109 779109 SNP 1 G T CDS Rv0678 Rv0678 778990 779487 497 + Leu 40 - Phe Leu40Phe ttg/ttt 120 120 bedaquiline (BDQ) CRyPTIC - consider CFZ-R (no support)
779109 779109 SNP 1 G C CDS Rv0678 Rv0678 778990 779487 497 + Leu 40 - Phe Leu40Phe ttg/ttc 120 120 bedaquiline (BDQ) CRyPTIC - consider CFZ-R (no support)
779107 779107 SNP 1 T A CDS Rv0678 Rv0678 778990 779487 497 + Leu 40 - Met Leu40Met ttg/atg 118 118 bedaquiline (BDQ) CRyPTIC - consider CFZ-R (no support)
779113 779113 SNP 1 T C CDS Rv0678 Rv0678 778990 779487 497 + Trp 42 - Arg Trp42Arg tgg/cgg 124 124 bedaquiline (BDQ) BDQ-S @Villellas et al doi:10.1093/jac/dkw502, BDQ-R @Kadura et al doi:10.1093/jac/dkaa136 - consider CFZ-R (no support)
779125 779125 SNP 1 T C CDS Rv0678 Rv0678 778990 779487 497 + Cys 46 - Arg Cys46Arg tgt/cgt 136 136 bedaquiline (BDQ) CRyPTIC - consider CFZ-R (no support)
779132 779132 SNP 1 C T CDS Rv0678 Rv0678 778990 779487 497 + Pro 48 - Leu Pro48Leu ccc/ctc 143 143 bedaquiline (BDQ) CRyPTIC - consider CFZ-R (no support)
779138 779138 SNP 1 G A CDS Rv0678 Rv0678 778990 779487 497 + Arg 50 - Gln Arg50Gln cgg/cag 149 149 bedaquiline (BDQ) CRyPTIC - consider CFZ-R (no support)
779144 779144 SNP 1 C T CDS Rv0678 Rv0678 778990 779487 497 + Ser 52 - Phe Ser52Phe tcc/ttc 155 155 bedaquiline (BDQ) Villellas et al doi:10.1093/jac/dkw502 - low BDQ MIC increase, consider CFZ-R (no support)
779165 779165 SNP 1 C T CDS Rv0678 Rv0678 778990 779487 497 + Ala 59 - Val Ala59Val gcg/gtg 176 176 bedaquiline (BDQ) Villellas et al doi:10.1093/jac/dkw502 - low BDQ MIC increase, consider CFZ-R (no support)
779174 779174 SNP 1 C T CDS Rv0678 Rv0678 778990 779487 497 + Ala 62 - Val Ala62Val gcc/gtc 185 185 bedaquiline (BDQ) Villellas et al doi:10.1093/jac/dkw502 - low BDQ MIC increase, consider CFZ-R (no support)
779186 779186 SNP 1 G A CDS Rv0678 Rv0678 778990 779487 497 + Gly 66 - Glu Gly66Glu ggg/gag 197 197 bedaquiline (BDQ) SONNENKALB - consider low CFZ MIC increase
779197 779197 SNP 1 A G CDS Rv0678 Rv0678 778990 779487 497 + Asn 70 - Asp Asn70Asp aat/gat 208 208 bedaquiline (BDQ) CRyPTIC - consider CFZ-R (no support)
779236 779236 SNP 1 C T CDS Rv0678 Rv0678 778990 779487 497 + Leu 83 - Phe Leu83Phe ctc/ttc 247 247 bedaquiline (BDQ) CRyPTIC - consider CFZ-R (no support)
779243 779243 SNP 1 T C CDS Rv0678 Rv0678 778990 779487 497 + Val 85 - Ala Val85Ala gtc/gcc 254 254 bedaquiline (BDQ) Zimenkov et al doi:10.1093/jac/dkx094 - consider CFZ-R (no support)
779268 779268 SNP 1 C A CDS Rv0678 Rv0678 778990 779487 497 + Phe 93 - Leu Phe93Leu ttc/tta 279 279 bedaquiline (BDQ) Nimmo et al doi: 10.1183/13993003.02383-2019 - consider CFZ-R (no support)
779268 779268 SNP 1 C G CDS Rv0678 Rv0678 778990 779487 497 + Phe 93 - Leu Phe93Leu ttc/ttg 279 279 bedaquiline (BDQ) Nimmo et al doi: 10.1183/13993003.02383-2019 - consider CFZ-R (no support)
779266 779267 SNP 2 TT GA CDS Rv0678 Rv0678 778990 779487 497 + Phe 93 - Asp Phe93Asp ttc/gac 277 278 bedaquiline (BDQ) Nimmo et al doi: 10.1183/13993003.02383-2019 - consider CFZ-R (no support)
779275 779275 SNP 1 C T CDS Rv0678 Rv0678 778990 779487 497 + Arg 96 - Trp Arg96Trp cgg/tgg 286 286 bedaquiline (BDQ) Battaglia et al doi:10.1101/2020.05.27.120451 - consider CFZ-R (no support)
779276 779276 SNP 1 G T CDS Rv0678 Rv0678 778990 779487 497 + Arg 96 - Leu Arg96Leu cgg/ctg 287 287 bedaquiline (BDQ) CRyPTIC - consider CFZ-R (no support)
779308 779308 SNP 1 C T CDS Rv0678 Rv0678 778990 779487 497 + Arg 107 - Cys Arg107Cys cgc/tgc 319 319 bedaquiline (BDQ) CRyPTIC - consider CFZ-R (no support)
779321 779321 SNP 1 T A CDS Rv0678 Rv0678 778990 779487 497 + Met 111 - Lys Met111Lys atg/aag 332 332 bedaquiline (BDQ) BATTAGLIA - "low BDQ MIC increase; consider CFZ-R (no support)"
779350 779350 SNP 1 G A CDS Rv0678 Rv0678 778990 779487 497 + Gly 121 - Arg Gly121Arg ggg/agg 361 361 bedaquiline (BDQ) CRyPTIC - consider CFZ-R (no support)
779392 779392 SNP 1 C G CDS Rv0678 Rv0678 778990 779487 497 + Arg 135 - Gly Arg135Gly cgg/ggg 403 403 bedaquiline (BDQ) Ismail et al doi: 10.1016/j.mimet.2018.08.011 - consider CFZ-R (no support)
779405 779405 SNP 1 T C CDS Rv0678 Rv0678 778990 779487 497 + Met 139 - Thr Met139Thr atg/acg 416 416 bedaquiline (BDQ) Veziris et al doi:10.1183/13993003.01719-2016 - consider CFZ-R (no support)
779414 779414 SNP 1 T G CDS Rv0678 Rv0678 778990 779487 497 + Leu 142 - Arg Leu142Arg ctg/cgg 425 425 bedaquiline (BDQ) Zimenkov et al doi:10.1093/jac/dkx094 - consider CFZ-R (no support)
1461127 1461127 SNP 1 A G CDS Rv1305 atpE 1461045 1461290 245 + Asp 28 - Gly Asp28Gly gac/ggc 83 83 bedaquiline (BDQ) SONNENKALB - -
1461127 1461127 SNP 1 A C CDS Rv1305 atpE 1461045 1461290 245 + Asp 28 - Ala Asp28Ala gac/gcc 83 83 bedaquiline (BDQ) Ismail et al doi: 10.1016/j.mimet.2018.08.011 - -
1461127 1461127 SNP 1 A T CDS Rv1305 atpE 1461045 1461290 245 + Asp 28 - Val Asp28Val gac/gtc 83 83 bedaquiline (BDQ) SONNENKALB - -
1461240 1461240 SNP 1 A G CDS Rv1305 atpE 1461045 1461290 245 + Ile 66 - Val Ile66Val atc/gtc 196 196 bedaquiline (BDQ) Kadura et al doi:10.1093/jac/dkaa136 - -
1461232 1461232 SNP 1 C T CDS Rv1305 atpE 1461045 1461290 245 + Ala 63 - Val Ala63Val gca/gta 188 188 bedaquiline (BDQ) Kadura et al doi:10.1093/jac/dkaa136 - -
1461242 1461242 SNP 1 C G CDS Rv1305 atpE 1461045 1461290 245 + Ile 66 - Met Ile66Met atc/atg 198 198 bedaquiline (BDQ) Segala et al doi:˜10.1128/AAC.06154-11 - -
1461126 1461126 SNP 1 G A CDS Rv1305 atpE 1461045 1461290 245 + Asp 28 - Asn Asp28Asn gac/aac 82 82 bedaquiline (BDQ) Zimenkov et al doi:10.1093/jac/dkx094 - -
1461227 1461227 SNP 1 G C CDS Rv1305 atpE 1461045 1461290 245 + Glu 61 - Asp Glu61Asp gag/gac 183 183 bedaquiline (BDQ) SONNENKALB (AA) - -
1461227 1461227 SNP 1 G T CDS Rv1305 atpE 1461045 1461290 245 + Glu 61 - Asp Glu61Asp gag/gat 183 183 bedaquiline (BDQ) SONNENKALB - -
1461231 1461231 SNP 1 G C CDS Rv1305 atpE 1461045 1461290 245 + Ala 63 - Pro Ala63Pro gca/cca 187 187 bedaquiline (BDQ) SONNENKALB - -
1461126 1461127 SNP 2 GA CC CDS Rv1305 atpE 1461045 1461290 245 + Asp 28 - Pro Asp28Pro gac/ccc 82 83 bedaquiline (BDQ) Kadura et al doi:10.1093/jac/dkaa136 - -
1461219 1461219 SNP 1 T G CDS Rv1305 atpE 1461045 1461290 245 + Leu 59 - Val Leu59Val ttg/gtg 175 175 bedaquiline (BDQ) Segala et al doi:˜10.1128/AAC.06154-11 - -
778991 778991 SNP 1 T C CDS Rv0678 Rv0678 778990 779487 497 + Val 1 - Ala Val1Ala gtg/gcg 2 2 bedaquiline (BDQ) clofazimine (CFZ) Bloemberget al doi:10.1056/NEJMc1505196 - -
779029 779029 SNP 1 C T CDS Rv0678 Rv0678 778990 779487 497 + Pro 14 - Ser Pro14Ser ccc/tcc 40 40 bedaquiline (BDQ) clofazimine (CFZ) CRyPTIC - -
779048 779048 SNP 1 T G CDS Rv0678 Rv0678 778990 779487 497 + Val 20 - Gly Val20Gly gtc/ggc 59 59 bedaquiline (BDQ) clofazimine (CFZ) Ghodousi et al doi:10.1128/AAC.00915-19 - -
779060 779060 SNP 1 G T CDS Rv0678 Rv0678 778990 779487 497 + Gly 24 - Val Gly24Val ggc/gtc 71 71 bedaquiline (BDQ) clofazimine (CFZ) SONNENKALB - -
779062 779062 SNP 1 G A CDS Rv0678 Rv0678 778990 779487 497 + Gly 25 - Ser Gly25Ser ggc/agc 73 73 bedaquiline (BDQ) clofazimine (CFZ) SONNENKALB - -
779086 779086 SNP 1 A G CDS Rv0678 Rv0678 778990 779487 497 + Thr 33 - Ala Thr33Ala act/gct 97 97 bedaquiline (BDQ) clofazimine (CFZ) Andries et al doi:10.1371/journal.pone.0102135 - low BDQ MIC increase
779096 779096 SNP 1 C T CDS Rv0678 Rv0678 778990 779487 497 + Ala 36 - Val Ala36Val gcg/gtg 107 107 bedaquiline (BDQ) clofazimine (CFZ) Andries et al doi:10.1371/journal.pone.0102135 - low BDQ MIC increase
779102 779102 SNP 1 G C CDS Rv0678 Rv0678 778990 779487 497 + Arg 38 - Pro Arg38Pro cga/cca 113 113 bedaquiline (BDQ) clofazimine (CFZ) SONNENKALB - -
779108 779108 SNP 1 T C CDS Rv0678 Rv0678 778990 779487 497 + Leu 40 - Ser Leu40Ser ttg/tcg 119 119 bedaquiline (BDQ) clofazimine (CFZ) SONNENKALB - -
779117 779117 SNP 1 T C CDS Rv0678 Rv0678 778990 779487 497 + Leu 43 - Pro Leu43Pro ctg/ccg 128 128 bedaquiline (BDQ) clofazimine (CFZ) SONNENKALB - -
779120 779120 SNP 1 T C CDS Rv0678 Rv0678 778990 779487 497 + Leu 44 - Pro Leu44Pro ctg/ccg 131 131 bedaquiline (BDQ) clofazimine (CFZ) SONNENKALB - -
779137 779137 SNP 1 C T CDS Rv0678 Rv0678 778990 779487 497 + Arg 50 - Trp Arg50Trp cgg/tgg 148 148 bedaquiline (BDQ) clofazimine (CFZ) SONNENKALB - -
779141 779141 SNP 1 A G CDS Rv0678 Rv0678 778990 779487 497 + Gln 51 - Arg Gln51Arg cag/cgg 152 152 bedaquiline (BDQ) clofazimine (CFZ) SONNENKALB - -
779140 779140 SNP 1 C A CDS Rv0678 Rv0678 778990 779487 497 + Gln 51 - Lys Gln51Lys cag/aag 151 151 bedaquiline (BDQ) clofazimine (CFZ) CRyPTIC - -
779147 779147 SNP 1 C T CDS Rv0678 Rv0678 778990 779487 497 + Ser 53 - Leu Ser53Leu tcg/ttg 158 158 bedaquiline (BDQ) clofazimine (CFZ) Kadura et al doi:10.1093/jac/dkaa136 - low BDQ MIC increase
779146 779146 SNP 1 T C CDS Rv0678 Rv0678 778990 779487 497 + Ser 53 - Pro Ser53Pro tcg/ccg 157 157 bedaquiline (BDQ) clofazimine (CFZ) Kadura et al doi:10.1093/jac/dkaa136 - -
779159 779159 SNP 1 C A CDS Rv0678 Rv0678 778990 779487 497 + Ala 57 - Glu Ala57Glu gcg/gag 170 170 bedaquiline (BDQ) clofazimine (CFZ) SONNENKALB - -
779174 779174 SNP 1 C A CDS Rv0678 Rv0678 778990 779487 497 + Ala 62 - Asp Ala62Asp gcc/gac 185 185 bedaquiline (BDQ) clofazimine (CFZ) SONNENKALB - -
779176 779176 SNP 1 A C CDS Rv0678 Rv0678 778990 779487 497 + Ser 63 - Arg Ser63Arg agc/cgc 187 187 bedaquiline (BDQ) clofazimine (CFZ) Kadura et al doi:10.1093/jac/dkaa136 - -
779176 779176 SNP 1 A G CDS Rv0678 Rv0678 778990 779487 497 + Ser 63 - Gly Ser63Gly agc/ggc 187 187 bedaquiline (BDQ) clofazimine (CFZ) SONNENKALB - -
779188 779188 SNP 1 A C CDS Rv0678 Rv0678 778990 779487 497 + Ile 67 - Leu Ile67Leu atc/ctc 199 199 bedaquiline (BDQ) clofazimine (CFZ) CRyPTIC - -
779188 779189 SNP 2 AT GA CDS Rv0678 Rv0678 778990 779487 497 + Ile 67 - Ser Ile67Ser atc/tcc 199 200 bedaquiline (BDQ) clofazimine (CFZ) CRyPTIC - -
779191 779191 SNP 1 A G CDS Rv0678 Rv0678 778990 779487 497 + Ser 68 - Gly Ser68Gly agc/ggc 202 202 bedaquiline (BDQ) clofazimine (CFZ) SONNENKALB - -
779192 779192 SNP 1 G A CDS Rv0678 Rv0678 778990 779487 497 + Ser 68 - Asn Ser68Asn agc/aac 203 203 bedaquiline (BDQ) clofazimine (CFZ) CRyPTIC - -
779203 779203 SNP 1 C T CDS Rv0678 Rv0678 778990 779487 497 + Arg 72 - Trp Arg72Trp cgg/tgg 214 214 bedaquiline (BDQ) clofazimine (CFZ) SONNENKALB - -
779204 779204 SNP 1 G T CDS Rv0678 Rv0678 778990 779487 497 + Arg 72 - Leu Arg72Leu cgg/ctg 215 215 bedaquiline (BDQ) clofazimine (CFZ) SONNENKALB - -
779209 779209 SNP 1 C G CDS Rv0678 Rv0678 778990 779487 497 + Leu 74 - Val Leu74Val ctg/gtg 220 220 bedaquiline (BDQ) clofazimine (CFZ) CRyPTIC - -
779210 779210 SNP 1 T C CDS Rv0678 Rv0678 778990 779487 497 + Leu 74 - Pro Leu74Pro ctg/ccg 221 221 bedaquiline (BDQ) clofazimine (CFZ) SONNENKALB - -
779224 779224 SNP 1 T G CDS Rv0678 Rv0678 778990 779487 497 + Phe 79 - Val Phe79Val ttc/gtc 235 235 bedaquiline (BDQ) clofazimine (CFZ) SONNENKALB - -
779225 779225 SNP 1 T G CDS Rv0678 Rv0678 778990 779487 497 + Phe 79 - Cys Phe79Cys ttc/tgc 236 236 bedaquiline (BDQ) clofazimine (CFZ) SONNENKALB - -
779237 779237 SNP 1 T C CDS Rv0678 Rv0678 778990 779487 497 + Leu 83 - Pro Leu83Pro ctc/ccc 248 248 bedaquiline (BDQ) clofazimine (CFZ) CRyPTIC - -
779240 779240 SNP 1 C T CDS Rv0678 Rv0678 778990 779487 497 + Ala 84 - Val Ala84Val gcg/gtg 251 251 bedaquiline (BDQ) clofazimine (CFZ) SONNENKALB - -
779256 779256 SNP 1 G A CDS Rv0678 Rv0678 778990 779487 497 + Arg 90 - Cys Arg90Cys cgc/tgc 266 266 bedaquiline (BDQ) clofazimine (CFZ) CRyPTIC - benign in BATTAGLIA
779269 779269 SNP 1 C T CDS Rv0678 Rv0678 778990 779487 497 + Arg 94 - Trp Arg94Trp cgg/tgg 280 280 bedaquiline (BDQ) clofazimine (CFZ) Andres et al doi:10.1164/rccm.201909-1819LE - -
779275 779275 SNP 1 C G CDS Rv0678 Rv0678 778990 779487 497 + Arg 96 - Gly Arg96Gly cgg/ggg 286 286 bedaquiline (BDQ) clofazimine (CFZ) CRyPTIC - -
779285 779285 SNP 1 C T CDS Rv0678 Rv0678 778990 779487 497 + Ala 99 - Val Ala99Val gct/gtt 296 296 bedaquiline (BDQ) clofazimine (CFZ) SONNENKALB - -
779291 779291 SNP 1 C A CDS Rv0678 Rv0678 778990 779487 497 + Ala 101 - Glu Ala101Glu gcg/gag 302 302 bedaquiline (BDQ) clofazimine (CFZ) CRyPTIC - -
779293 779293 SNP 1 G A CDS Rv0678 Rv0678 778990 779487 497 + Ala 102 - Thr Ala102Thr gct/act 304 304 bedaquiline (BDQ) clofazimine (CFZ) SONNENKALB - -
779296 779296 SNP 1 G C CDS Rv0678 Rv0678 778990 779487 497 + Gly 103 - Arg Gly103Arg ggc/cgc 307 307 bedaquiline (BDQ) clofazimine (CFZ) SONNENKALB - -
779312 779312 SNP 1 T C CDS Rv0678 Rv0678 778990 779487 497 + Ile 108 - Thr Ile108Thr atc/acc 323 323 bedaquiline (BDQ) clofazimine (CFZ) CRyPTIC - -
779326 779326 SNP 1 G A CDS Rv0678 Rv0678 778990 779487 497 + Glu 113 - Lys Glu113Lys gaa/aaa 337 337 bedaquiline (BDQ) clofazimine (CFZ) CRyPTIC - -
779330 779330 SNP 1 T C CDS Rv0678 Rv0678 778990 779487 497 + Leu 114 - Pro Leu114Pro ctg/ccg 341 341 bedaquiline (BDQ) clofazimine (CFZ) SONNENKALB - -
779342 779342 SNP 1 C A CDS Rv0678 Rv0678 778990 779487 497 + Ala 118 - Asp Ala118Asp gct/gat 353 353 bedaquiline (BDQ) clofazimine (CFZ) SONNENKALB - -
779351 779351 SNP 1 G A CDS Rv0678 Rv0678 778990 779487 497 + Gly 121 - Glu Gly121Glu ggg/gag 362 362 bedaquiline (BDQ) clofazimine (CFZ) SONNENKALB - -
779354 779354 SNP 1 T C CDS Rv0678 Rv0678 778990 779487 497 + Leu 122 - Pro Leu122Pro ctg/ccg 365 365 bedaquiline (BDQ) clofazimine (CFZ) SONNENKALB - -
779363 779363 SNP 1 T C CDS Rv0678 Rv0678 778990 779487 497 + Leu 125 - Pro Leu125Pro ctg/ccg 374 374 bedaquiline (BDQ) clofazimine (CFZ) SONNENKALB - -
779384 779384 SNP 1 G C CDS Rv0678 Rv0678 778990 779487 497 + Arg 132 - Pro Arg132Pro cga/cca 395 395 bedaquiline (BDQ) clofazimine (CFZ) SONNENKALB - -
779392 779392 SNP 1 C T CDS Rv0678 Rv0678 778990 779487 497 + Arg 135 - Trp Arg135Trp cgg/tgg 403 403 bedaquiline (BDQ) clofazimine (CFZ) SONNENKALB - -
779396 779396 SNP 1 T C CDS Rv0678 Rv0678 778990 779487 497 + Leu 136 - Pro Leu136Pro ctg/ccg 407 407 bedaquiline (BDQ) clofazimine (CFZ) SONNENKALB - -
779406 779406 SNP 1 G C CDS Rv0678 Rv0678 778990 779487 497 + Met 139 - Ile Met139Ile atg/atc 417 417 bedaquiline (BDQ) clofazimine (CFZ) CRyPTIC - -
779406 779406 SNP 1 G T CDS Rv0678 Rv0678 778990 779487 497 + Met 139 - Ile Met139Ile atg/att 417 417 bedaquiline (BDQ) clofazimine (CFZ) CRyPTIC - -
779406 779406 SNP 1 G A CDS Rv0678 Rv0678 778990 779487 497 + Met 139 - Ile Met139Ile atg/ata 417 417 bedaquiline (BDQ) clofazimine (CFZ) CRyPTIC - -
779426 779426 SNP 1 T C CDS Rv0678 Rv0678 778990 779487 497 + Met 146 - Thr Met146Thr atg/acg 437 437 bedaquiline (BDQ) clofazimine (CFZ) Xu et al doi:10.1128/AAC.00239-17 - -
779440 779440 SNP 1 T C CDS Rv0678 Rv0678 778990 779487 497 + Ser 151 - Pro Ser151Pro tcc/ccc 451 451 bedaquiline (BDQ) clofazimine (CFZ) SONNENKALB - -
779450 779450 SNP 1 T C CDS Rv0678 Rv0678 778990 779487 497 + Leu 154 - Pro Leu154Pro ctg/ccg 461 461 bedaquiline (BDQ) clofazimine (CFZ) "SONNENKALB;Ismail et al doi: 10.1016/j.mimet.2018.08.011" - -
1918160 1918160 SNP 1 T C CDS Rv1694 tlyA 1917940 1918746 806 + Leu 74 - Pro Leu74Pro ctg/ccg 221 221 capreomycin (CPR) "WHO2018;Maruri et al doi: 10.1093/jac/dkr566" yes -
1918334 1918334 SNP 1 A C CDS Rv1694 tlyA 1917940 1918746 806 + Glu 132 - Ala Glu132Ala gag/gcg 395 395 capreomycin (CPR) "WHO2018;Malik et al doi: 10.1371/journal.pone.0039754" yes -
1918334 1918334 SNP 1 A G CDS Rv1694 tlyA 1917940 1918746 806 + Glu 132 - Gly Glu132Gly gag/ggg 395 395 capreomycin (CPR) "WHO2018;Malik et al doi: 10.1371/journal.pone.0039754" yes -
1918634 1918634 SNP 1 G A CDS Rv1694 tlyA 1917940 1918746 806 + Gly 232 - Asp Gly232Asp ggc/gac 695 695 capreomycin (CPR) "LITERATURE;Malik et al doi: 10.1371/journal.pone.0039754" yes -
1918647 1918647 SNP 1 T G CDS Rv1694 tlyA 1917940 1918746 806 + Asn 236 - Lys Asn236Lys aat/aag 708 708 capreomycin (CPR) "WHO2018;Maruri et al doi: 10.1093/jac/dkr566" - -
1918647 1918647 SNP 1 T A CDS Rv1694 tlyA 1917940 1918746 806 + Asn 236 - Lys Asn236Lys aat/aaa 708 708 capreomycin (CPR) "WHO2018;Maruri et al doi: 10.1093/jac/dkr566" - -
779054 779054 SNP 1 A T CDS Rv0678 Rv0678 778990 779487 497 + Gln 22 - Leu Gln22Leu cag/ctg 65 65 clofazimine (CFZ) "WHO2018;Maruri et al doi: 10.1093/jac/dkr566" - consider BDQ-R (no support)
779063 779063 SNP 1 G A CDS Rv0678 Rv0678 778990 779487 497 + Gly 25 - Asp Gly25Asp ggc/gac 74 74 clofazimine (CFZ) "WHO2018;Maruri et al doi: 10.1093/jac/dkr566" - consider BDQ-R (no support)
779126 779126 SNP 1 G A CDS Rv0678 Rv0678 778990 779487 497 + Cys 46 - Tyr Cys46Tyr tgt/tat 137 137 clofazimine (CFZ) "WHO2018;Maruri et al doi: 10.1093/jac/dkr566" - consider BDQ-R (no support)
779193 779193 SNP 1 C A CDS Rv0678 Rv0678 778990 779487 497 + Ser 68 - Arg Ser68Arg agc/aga 204 204 clofazimine (CFZ) "WHO2018;Maruri et al doi: 10.1093/jac/dkr566" - consider BDQ-R (no support)
779193 779193 SNP 1 C G CDS Rv0678 Rv0678 778990 779487 497 + Ser 68 - Arg Ser68Arg agc/agg 204 204 clofazimine (CFZ) "WALKER;Dessen et al DOI:10.1126/science.7886450" - consider BDQ-R (no support)
1931093 1931093 SNP 1 G A CDS Rv1704c cycA 1931456 1929786 1670 - Gly 122 - Ser Gly122Ser ggc/agc 363 363 cycloserine (CS) "LITERATURE;McNeil et al doi: 10.1128/AAC.01296-17 " - -
3841356 3841356 SNP 1 C T CDS Rv3423c alr 3841420 3840194 1226 - Ser 22 - Leu Ser22Leu tcg/ttg 64 64 cycloserine (CS) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - updated gene annotation: -8t/c
3840393 3840393 SNP 1 T C CDS Rv3423c alr 3841420 3840194 1226 - Met 343 - Thr Met343Thr atg/acg 1027 1027 cycloserine (CS) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - updated gene annotation: M319T
3840391 3840391 SNP 1 G A CDS Rv3423c alr 3841420 3840194 1226 - Asp 344 - Asn Asp344Asn gac/aac 1029 1029 cycloserine (CS) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - updated gene annotation: D320T
3840232 3840232 SNP 1 C G CDS Rv3423c alr 3841420 3840194 1226 - Arg 397 - Gly Arg397Gly cgt/ggt 1188 1188 cycloserine (CS) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - updated gene annotation: R377G
3840231 3840231 SNP 1 G T CDS Rv3423c alr 3841420 3840194 1226 - Arg 397 - Leu Arg397Leu cgt/ctt 1189 1189 cycloserine (CS) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - updated gene annotation: R373L
3840258 3840258 SNP 1 A G CDS Rv3423c alr 3841420 3840194 1226 - Tyr 388 - Cys Tyr388Cys tac/tcc 1162 1162 cycloserine (CS) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - updated gene annotation: Y364C
3840259 3840259 SNP 1 T G CDS Rv3423c alr 3841420 3840194 1226 - Tyr 388 - Asp Tyr388Asp tac/gac 1161 1161 cycloserine (CS) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - updated gene annotation: Y364D
1303241 1303241 SNP 1 A G CDS Rv1173 fbiC 1302931 1305501 2570 + Tyr 104 - Cys Tyr104Cys tat/tgt 311 311 delamanid (DLM) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
1305101 1305101 SNP 1 A G CDS Rv1173 fbiC 1302931 1305501 2570 + Asn 724 - Ser Asn724Ser aac/agc 2171 2171 delamanid (DLM) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - low MIC increase
1304498 1304498 SNP 1 C T CDS Rv1173 fbiC 1302931 1305501 2570 + Pro 523 - Leu Pro523Leu cct/ctt 1568 1568 delamanid (DLM) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
1305434 1305434 SNP 1 C T CDS Rv1173 fbiC 1302931 1305501 2570 + Ala 835 - Val Ala835Val gcg/gtg 2504 2504 delamanid (DLM) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
1305496 1305496 SNP 1 G C CDS Rv1173 fbiC 1302931 1305501 2570 + Ala 856 - Pro Ala856Pro gcc/ccc 2566 2566 delamanid (DLM) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - low MIC increase
1305494 1305556 del 62 cggccta? GAP CDS Rv1173 fbiC 1302931 1305501 2570 + Ala 855 - - Ala855fs frameshift 2564 2625 delamanid (DLM) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
3641164 3641164 SNP 1 A G CDS Rv3261 fbiA 3640543 3641538 995 + Ile 208 - Val Ile208Val atc/gtc 622 622 delamanid (DLM) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - low MIC increase
3641167 3641167 SNP 1 A G CDS Rv3261 fbiA 3640543 3641538 995 + Ile 209 - Val Ile209Val atc/gtc 625 625 delamanid (DLM) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
3641403 3641403 SNP 1 C A CDS Rv3261 fbiA 3640543 3641538 995 + Cys 287 - STOP Cys287STOP tgc/tga 861 861 delamanid (DLM) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
3641453 3641453 SNP 1 G A CDS Rv3261 fbiA 3640543 3641538 995 + Arg 304 - Gln Arg304Gln cgg/cag 911 911 delamanid (DLM) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - low MIC increase
3640687 3640687 SNP 1 G T CDS Rv3261 fbiA 3640543 3641538 995 + Asp 49 - Tyr Asp49Tyr gac/tac 145 145 delamanid (DLM) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
3641290 3641290 SNP 1 A T CDS Rv3261 fbiA 3640543 3641538 995 + Lys 250 - STOP Lys250STOP aag/tag 748 748 delamanid (DLM) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
3642204 3642204 SNP 1 G A CDS Rv3262 fbiB 3641535 3642881 1346 + Asp 224 - Asn Asp224Asn gac/aac 670 670 delamanid (DLM) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
3642351 3642351 SNP 1 G C CDS Rv3262 fbiB 3641535 3642881 1346 + Gly 273 - Arg Gly273Arg ggc/cgc 817 817 delamanid (DLM) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - low MIC increase
3986848 3986848 SNP 1 C A CDS Rv3547 ddn 3986844 3987299 455 + Pro 2 - Gln Pro2Gln ccg/cag 5 5 delamanid (DLM) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - low MIC increase
3986932 3986932 SNP 1 G A CDS Rv3547 ddn 3986844 3987299 455 + Arg 30 - His Arg30His cgc/cac 89 89 delamanid (DLM) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
3986989 3986989 SNP 1 T C CDS Rv3547 ddn 3986844 3987299 455 + Leu 49 - Pro Leu49Pro ctg/ccg 146 146 delamanid (DLM) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
3987015 3987015 SNP 1 C T CDS Rv3547 ddn 3986844 3987299 455 + Gln 58 - STOP Gln58STOP cag/tag 172 172 delamanid (DLM) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
3987115 3987115 SNP 1 A C CDS Rv3547 ddn 3986844 3987299 455 + Asn 91 - Thr Asn91Thr aac/acc 272 272 delamanid (DLM) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - low MIC increase
3987262 3987262 SNP 1 C T CDS Rv3547 ddn 3986844 3987299 455 + Thr 140 - Ile Thr140Ile acc/atc 419 419 delamanid (DLM) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
3987001 3987001 SNP 1 G A CDS Rv3547 ddn 3986844 3987299 455 + Gly 53 - Asp Gly53Asp ggc/gac 158 158 delamanid (DLM) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
3987107 3987107 SNP 1 G A CDS Rv3547 ddn 3986844 3987299 455 + Trp 88 - STOP Trp88STOP tgg/tga 264 264 delamanid (DLM) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
3987106 3987106 SNP 1 G A CDS Rv3547 ddn 3986844 3987299 455 + Trp 88 - STOP Trp88STOP tgg/tag 263 263 delamanid (DLM) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
3987163 3987163 SNP 1 T C CDS Rv3547 ddn 3986844 3987299 455 + Leu 107 - Pro Leu107Pro ctg/ccg 320 320 delamanid (DLM) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
4243217 4243217 SNP 1 C A PROM Rv3794 embA 4243233 4246517 3284 + - - - - -16c>a -16c>a -16 -16 ethambutol (EMB) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - increased MIC
4243217 4243217 SNP 1 C G PROM Rv3794 embA 4243233 4246517 3284 + - - - - -16c>g -16c>g -16 -16 ethambutol (EMB) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - increased MIC
4243217 4243217 SNP 1 C T PROM Rv3794 embA 4243233 4246517 3284 + - - - - -16c>t -16c>t -16 -16 ethambutol (EMB) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - increased MIC
4243221 4243221 SNP 1 C T PROM Rv3794 embA 4243233 4246517 3284 + - - - - -12c>t -12c>t -12 -12 ethambutol (EMB) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - increased MIC
4243222 4243222 SNP 1 C T PROM Rv3794 embA 4243233 4246517 3284 + - - - - -11c>t -11c>t -11 -11 ethambutol (EMB) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - increased MIC
4243222 4243222 SNP 1 C A PROM Rv3794 embA 4243233 4246517 3284 + - - - - -11c>a -11c>a -11 -11 ethambutol (EMB) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - increased MIC
4243225 4243225 SNP 1 C T PROM Rv3794 embA 4243233 4246517 3284 + - - - - -8c>t -8c>t -8 -8 ethambutol (EMB) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - increased MIC
4243225 4243225 SNP 1 C A PROM Rv3794 embA 4243233 4246517 3284 + - - - - -8c>a -8c>a -8 -8 ethambutol (EMB) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
4243206 4243206 del 1 T GAP PROM Rv3794 embA 4243233 4246517 3284 + - - - - -27_del_t -27_del_t -27 -27 ethambutol (EMB) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - increased MIC
4246734 4246734 SNP 1 T G CDS Rv3795 embB 4246514 4249810 3296 + Leu 74 - Arg Leu74Arg ctg/cgg 221 221 ethambutol (EMB) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
4247469 4247469 SNP 1 A G CDS Rv3795 embB 4246514 4249810 3296 + Tyr 319 - Cys Tyr319Cys tat/tgt 956 956 ethambutol (EMB) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
4247729 4247729 SNP 1 G T CDS Rv3795 embB 4246514 4249810 3296 + Gly 406 - Cys Gly406Cys ggc/tgc 1216 1216 ethambutol (EMB) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
4247730 4247730 SNP 1 G T CDS Rv3795 embB 4246514 4249810 3296 + Gly 406 - Val Gly406Val ggc/gtc 1217 1217 ethambutol (EMB) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
4248002 4248002 SNP 1 C G CDS Rv3795 embB 4246514 4249810 3296 + Gln 497 - Glu Gln497Glu cag/gag 1489 1489 ethambutol (EMB) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
4248003 4248003 SNP 1 A T CDS Rv3795 embB 4246514 4249810 3296 + Gln 497 - Leu Gln497Leu cag/ctg 1490 1490 ethambutol (EMB) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
4247469 4247469 SNP 1 A C CDS Rv3795 embB 4246514 4249810 3296 + Tyr 319 - Ser Tyr319Ser tat/tct 956 956 ethambutol (EMB) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - unclear MIC increase
4247496 4247496 SNP 1 A G CDS Rv3795 embB 4246514 4249810 3296 + Asp 328 - Gly Asp328Gly gat/ggt 983 983 ethambutol (EMB) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
4247495 4247495 SNP 1 G T CDS Rv3795 embB 4246514 4249810 3296 + Asp 328 - Tyr Asp328Tyr gat/tat 982 982 ethambutol (EMB) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
4247574 4247574 SNP 1 A C CDS Rv3795 embB 4246514 4249810 3296 + Asp 354 - Ala Asp354Ala gac/gcc 1061 1061 ethambutol (EMB) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
4247730 4247730 SNP 1 G C CDS Rv3795 embB 4246514 4249810 3296 + Gly 406 - Ala Gly406Ala ggc/gcc 1217 1217 ethambutol (EMB) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
4247730 4247730 SNP 1 G A CDS Rv3795 embB 4246514 4249810 3296 + Gly 406 - Asp Gly406Asp ggc/gac 1217 1217 ethambutol (EMB) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
4247729 4247729 SNP 1 G A CDS Rv3795 embB 4246514 4249810 3296 + Gly 406 - Ser Gly406Ser ggc/agc 1216 1216 ethambutol (EMB) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
4247431 4247431 SNP 1 G A CDS Rv3795 embB 4246514 4249810 3296 + Met 306 - Ile Met306Ile atg/ata 918 918 ethambutol (EMB) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
4247431 4247431 SNP 1 G T CDS Rv3795 embB 4246514 4249810 3296 + Met 306 - Ile Met306Ile atg/att 918 918 ethambutol (EMB) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
4247431 4247431 SNP 1 G C CDS Rv3795 embB 4246514 4249810 3296 + Met 306 - Ile Met306Ile atg/atc 918 918 ethambutol (EMB) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
4247429 4247429 SNP 1 A C CDS Rv3795 embB 4246514 4249810 3296 + Met 306 - Leu Met306Leu atg/ctg 916 916 ethambutol (EMB) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
4247429 4247429 SNP 1 A G CDS Rv3795 embB 4246514 4249810 3296 + Met 306 - Val Met306Val atg/gtg 916 916 ethambutol (EMB) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
4249612 4249612 SNP 1 C G CDS Rv3795 embB 4246514 4249810 3296 + Asn 1033 - Lys Asn1033Lys aac/aag 3099 3099 ethambutol (EMB) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
4249612 4249612 SNP 1 C A CDS Rv3795 embB 4246514 4249810 3296 + Asn 1033 - Lys Asn1033Lys aac/aaa 3099 3099 ethambutol (EMB) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
4249518 4249518 SNP 1 A G CDS Rv3795 embB 4246514 4249810 3296 + His 1002 - Arg His1002Arg cac/cgc 3004 3004 ethambutol (EMB) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
4248002 4248002 SNP 1 C A CDS Rv3795 embB 4246514 4249810 3296 + Gln 497 - Lys Gln497Lys cag/aag 1489 1489 ethambutol (EMB) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
4248003 4248003 SNP 1 A G CDS Rv3795 embB 4246514 4249810 3296 + Gln 497 - Arg Gln497Arg cag/cgg 1490 1490 ethambutol (EMB) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
4327472 4327472 SNP 1 T G CDS Rv3854c ethA 4327473 4326004 1469 - Met 1 - Arg Met1Arg atg/agg 1 1 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
4327480 4327480 SNP 1 T C PROM Rv3854c ethA 4327473 4326004 1469 - - - - - -7t>c -7t>c -7 -7 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - low-level ETH-R
4327480 4327480 SNP 1 T G PROM Rv3854c ethA 4327473 4326004 1469 - - - - - -7t>g -7t>g -7 -7 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
4326038 4326038 SNP 1 G C CDS Rv3854c ethA 4327473 4326004 1469 - Arg 479 - Pro Arg479Pro cgg/ccg 1435 1435 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
4326048 4326048 SNP 1 G C CDS Rv3854c ethA 4327473 4326004 1469 - Glu 476 - Gln Glu476Gln gag/cag 1425 1425 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
4326092 4326092 SNP 1 A G CDS Rv3854c ethA 4327473 4326004 1469 - Tyr 461 - Cys Tyr461Cys tac/tgc 1381 1381 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
4326168 4326168 SNP 1 C G CDS Rv3854c ethA 4327473 4326004 1469 - Pro 436 - Ala Pro436Ala cca/gca 1305 1305 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
4326278 4326278 SNP 1 C T CDS Rv3854c ethA 4327473 4326004 1469 - Ser 399 - Leu Ser399Leu tcg/ttg 1195 1195 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
4326288 4326288 SNP 1 G A CDS Rv3854c ethA 4327473 4326004 1469 - Asp 396 - Asn Asp396Asn gac/aac 1185 1185 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
4326301 4326301 SNP 1 G C CDS Rv3854c ethA 4327473 4326004 1469 - Trp 391 - Cys Trp391Cys tgg/tgc 1172 1172 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
4326301 4326301 SNP 1 G T CDS Rv3854c ethA 4327473 4326004 1469 - Trp 391 - Cys Trp391Cys tgg/tgt 1172 1172 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
4326305 4326305 SNP 1 C T CDS Rv3854c ethA 4327473 4326004 1469 - Ser 390 - Phe Ser390Phe tcc/ttc 1168 1168 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
4326305 4326305 SNP 1 C A CDS Rv3854c ethA 4327473 4326004 1469 - Ser 390 - Tyr Ser390Tyr ttc/tac 1168 1168 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
4326317 4326317 SNP 1 A C CDS Rv3854c ethA 4327473 4326004 1469 - Tyr 386 - Ser Tyr386Ser tac/tcc 1156 1156 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
4326339 4326339 SNP 1 A G CDS Rv3854c ethA 4327473 4326004 1469 - Asn 379 - Asp Asn379Asp aac/gac 1134 1134 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
4326339 4326339 SNP 1 A C CDS Rv3854c ethA 4327473 4326004 1469 - Asn 379 - His Asn379His aac/cac 1134 1134 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
4326341 4326341 SNP 1 C T CDS Rv3854c ethA 4327473 4326004 1469 - Pro 378 - Leu Pro378Leu ccc/ctc 1132 1132 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
4326350 4326350 SNP 1 C A CDS Rv3854c ethA 4327473 4326004 1469 - Ser 375 - Tyr Ser375Tyr tcc/tac 1123 1123 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
4326368 4326368 SNP 1 A G CDS Rv3854c ethA 4327473 4326004 1469 - Tyr 369 - Cys Tyr369Cys tac/tgc 1105 1105 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
4326413 4326413 SNP 1 C G CDS Rv3854c ethA 4327473 4326004 1469 - Ala 354 - Gly Ala354Gly gcg/ggg 1060 1060 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
4326419 4326419 SNP 1 C A CDS Rv3854c ethA 4327473 4326004 1469 - Ala 352 - Glu Ala352Glu gcg/gag 1054 1054 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
4326426 4326426 SNP 1 G T CDS Rv3854c ethA 4327473 4326004 1469 - Gly 350 - Cys Gly350Cys ggt/tgt 1047 1047 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
4326452 4326452 SNP 1 C A CDS Rv3854c ethA 4327473 4326004 1469 - Ala 341 - Glu Ala341Glu gca/gaa 1021 1021 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
4326455 4326455 SNP 1 C T CDS Rv3854c ethA 4327473 4326004 1469 - Thr 340 - Ile Thr340Ile acc/atc 1018 1018 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
4326515 4326515 SNP 1 T C CDS Rv3854c ethA 4327473 4326004 1469 - Phe 320 - Ser Phe320Ser ttc/tcc 958 958 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
4326534 4326534 SNP 1 A G CDS Rv3854c ethA 4327473 4326004 1469 - Thr 314 - Ala Thr314Ala acc/gcc 939 939 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
4326588 4326588 SNP 1 G A CDS Rv3854c ethA 4327473 4326004 1469 - Val 296 - Met Val296Met gtg/atg 885 885 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
4326592 4326592 SNP 1 C G CDS Rv3854c ethA 4327473 4326004 1469 - Cys 294 - Trp Cys294Trp tgc/tgg 881 881 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
4326604 4326604 SNP 1 C G CDS Rv3854c ethA 4327473 4326004 1469 - Asp 290 - Glu Asp290Glu gac/gag 869 869 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
4326604 4326604 SNP 1 C A CDS Rv3854c ethA 4327473 4326004 1469 - Asp 290 - Glu Asp290Glu gac/gaa 869 869 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
4326609 4326609 SNP 1 T C CDS Rv3854c ethA 4327473 4326004 1469 - Trp 289 - Arg Trp289Arg tgg/cgg 864 864 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
4326613 4326613 SNP 1 C G CDS Rv3854c ethA 4327473 4326004 1469 - Asn 287 - Lys Asn287Lys aac/aag 860 860 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
4326613 4326613 SNP 1 C A CDS Rv3854c ethA 4327473 4326004 1469 - Asn 287 - Lys Asn287Lys aac/aaa 860 860 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
4326620 4326620 SNP 1 A C CDS Rv3854c ethA 4327473 4326004 1469 - His 285 - Pro His285Pro cac/ccc 853 853 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
4326624 4326624 SNP 1 C G CDS Rv3854c ethA 4327473 4326004 1469 - Pro 284 - Ala Pro284Ala ccg/gcg 849 849 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
4326628 4326628 SNP 1 C G CDS Rv3854c ethA 4327473 4326004 1469 - Phe 282 - Leu Phe282Leu ttc/ttg 845 845 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
4326628 4326628 SNP 1 C A CDS Rv3854c ethA 4327473 4326004 1469 - Phe 282 - Leu Phe282Leu ttc/tta 845 845 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
4326630 4326630 SNP 1 T C CDS Rv3854c ethA 4327473 4326004 1469 - Phe 282 - Leu Phe282Leu ttc/ctc 843 843 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
4326632 4326632 SNP 1 A C CDS Rv3854c ethA 4327473 4326004 1469 - His 281 - Pro His281Pro cac/ccc 841 841 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
4326632 4326632 SNP 1 A G CDS Rv3854c ethA 4327473 4326004 1469 - His 281 - Arg His281Arg cac/cgc 841 841 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
4326647 4326647 SNP 1 A G CDS Rv3854c ethA 4327473 4326004 1469 - Tyr 276 - Cys Tyr276Cys tac/tgc 826 826 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
4326648 4326648 SNP 1 T C CDS Rv3854c ethA 4327473 4326004 1469 - Tyr 276 - His Tyr276His tac/cac 825 825 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
4326661 4326661 SNP 1 G T CDS Rv3854c ethA 4327473 4326004 1469 - Gln 271 - His Gln271His cag/cat 812 812 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
4326661 4326661 SNP 1 G C CDS Rv3854c ethA 4327473 4326004 1469 - Gln 271 - His Gln271His cag/cac 812 812 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
4326704 4326704 SNP 1 C G CDS Rv3854c ethA 4327473 4326004 1469 - Pro 257 - Arg Pro257Arg cca/cga 769 769 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
4326704 4326704 SNP 1 C T CDS Rv3854c ethA 4327473 4326004 1469 - Pro 257 - Leu Pro257Leu cca/cta 769 769 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
4326704 4326704 SNP 1 C A CDS Rv3854c ethA 4327473 4326004 1469 - Pro 257 - Gln Pro257Gln cca/caa 769 769 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
4326705 4326705 SNP 1 C T CDS Rv3854c ethA 4327473 4326004 1469 - Pro 257 - Ser Pro257Ser cca/tca 768 768 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
4326705 4326705 SNP 1 C A CDS Rv3854c ethA 4327473 4326004 1469 - Pro 257 - Thr Pro257Thr cca/aca 768 768 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
4326715 4326715 SNP 1 C G CDS Rv3854c ethA 4327473 4326004 1469 - Cys 253 - Trp Cys253Trp tgc/tgg 758 758 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
4326716 4326716 SNP 1 G T CDS Rv3854c ethA 4327473 4326004 1469 - Cys 253 - Phe Cys253Phe tgc/ttc 757 757 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
4326723 4326723 SNP 1 A C CDS Rv3854c ethA 4327473 4326004 1469 - Ser 251 - Arg Ser251Arg agc/cgc 750 750 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
4326721 4326721 SNP 1 C A CDS Rv3854c ethA 4327473 4326004 1469 - Ser 251 - Arg Ser251Arg agc/agt 752 752 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
4326721 4326721 SNP 1 C G CDS Rv3854c ethA 4327473 4326004 1469 - Ser 251 - Arg Ser251Arg agc/agg 752 752 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
4326762 4326762 SNP 1 G A CDS Rv3854c ethA 4327473 4326004 1469 - Val 238 - Ile Val238Ile gta/ata 711 711 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
4326780 4326780 SNP 1 A G CDS Rv3854c ethA 4327473 4326004 1469 - Thr 232 - Ala Thr232Ala acc/gcc 693 693 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
4326800 4326800 SNP 1 T C CDS Rv3854c ethA 4327473 4326004 1469 - Leu 225 - Pro Leu225Pro ctc/ccc 673 673 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
4326800 4326800 SNP 1 T G CDS Rv3854c ethA 4327473 4326004 1469 - Leu 225 - Arg Leu225Arg ctc/cgc 673 673 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
4326800 4326800 SNP 1 T A CDS Rv3854c ethA 4327473 4326004 1469 - Leu 225 - His Leu225His ctc/cac 673 673 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
4326843 4326843 SNP 1 T C CDS Rv3854c ethA 4327473 4326004 1469 - Tyr 211 - His Tyr211His tac/cac 630 630 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
4326843 4326843 SNP 1 T G CDS Rv3854c ethA 4327473 4326004 1469 - Tyr 211 - Asp Tyr211Asp tac/gac 630 630 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
4326855 4326855 SNP 1 C G CDS Rv3854c ethA 4327473 4326004 1469 - Arg 207 - Gly Arg207Gly cgc/ggc 618 618 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
4326855 4326855 SNP 1 C T CDS Rv3854c ethA 4327473 4326004 1469 - Arg 207 - Cys Arg207Cys cgc/tgc 618 618 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
4326855 4326855 SNP 1 C A CDS Rv3854c ethA 4327473 4326004 1469 - Arg 207 - Ser Arg207Ser cgc/agc 618 618 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
4326899 4326899 SNP 1 C T CDS Rv3854c ethA 4327473 4326004 1469 - Pro 192 - Leu Pro192Leu ccg/ctg 574 574 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
4326903 4326903 SNP 1 G A CDS Rv3854c ethA 4327473 4326004 1469 - Val 191 - Met Val191Met gtg/atg 570 570 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
4326905 4326905 SNP 1 T C CDS Rv3854c ethA 4327473 4326004 1469 - Leu 190 - Pro Leu190Pro ctc/ccc 568 568 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
4326906 4326906 SNP 1 C T CDS Rv3854c ethA 4327473 4326004 1469 - Leu 190 - Phe Leu190Phe ctc/ttc 567 567 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
4326938 4326938 SNP 1 T G CDS Rv3854c ethA 4327473 4326004 1469 - Val 179 - Gly Val179Gly gtc/ggc 535 535 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
4326942 4326942 SNP 1 A G CDS Rv3854c ethA 4327473 4326004 1469 - Ile 178 - Val Ile178Val atc/gtc 531 531 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
4326981 4326981 SNP 1 C G CDS Rv3854c ethA 4327473 4326004 1469 - Gln 165 - Glu Gln165Glu cag/gag 492 492 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
4326992 4326992 SNP 1 T G CDS Rv3854c ethA 4327473 4326004 1469 - Ile 161 - Ser Ile161Ser atc/agc 481 481 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
4326996 4326996 SNP 1 C T CDS Rv3854c ethA 4327473 4326004 1469 - Pro 160 - Ser Pro160Ser ccg/tcg 477 477 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
4326996 4326996 SNP 1 C A CDS Rv3854c ethA 4327473 4326004 1469 - Pro 160 - Thr Pro160Thr ccg/acg 477 477 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
4327034 4327034 SNP 1 A C CDS Rv3854c ethA 4327473 4326004 1469 - Tyr 147 - Ser Tyr147Ser tac/tcc 439 439 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
4327088 4327088 SNP 1 T G CDS Rv3854c ethA 4327473 4326004 1469 - Leu 129 - Arg Leu129Arg ctc/cgc 385 385 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
4327098 4327098 SNP 1 C T CDS Rv3854c ethA 4327473 4326004 1469 - Leu 126 - Phe Leu126Phe ctc/ttc 375 375 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
4327147 4327147 SNP 1 G C CDS Rv3854c ethA 4327473 4326004 1469 - Trp 109 - Cys Trp109Cys tgg/tgc 326 326 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
4327147 4327147 SNP 1 G T CDS Rv3854c ethA 4327473 4326004 1469 - Trp 109 - Cys Trp109Cys tgg/tgt 326 326 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
4327193 4327193 SNP 1 T G CDS Rv3854c ethA 4327473 4326004 1469 - Ile 94 - Ser Ile94Ser atc/agc 280 280 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
4327211 4327211 SNP 1 C T CDS Rv3854c ethA 4327473 4326004 1469 - Thr 88 - Ile Thr88Ile acc/atc 262 262 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
4327247 4327247 SNP 1 C A CDS Rv3854c ethA 4327473 4326004 1469 - Ala 76 - Asp Ala76Asp gcc/gac 226 226 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
4327269 4327269 SNP 1 T A CDS Rv3854c ethA 4327473 4326004 1469 - Trp 69 - Arg Trp69Arg tgg/agg 204 204 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
4327278 4327278 SNP 1 T C CDS Rv3854c ethA 4327473 4326004 1469 - Phe 66 - Leu Phe66Leu ttc/ctc 195 195 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
4327304 4327304 SNP 1 C A CDS Rv3854c ethA 4327473 4326004 1469 - Ser 57 - Tyr Ser57Tyr tcc/tac 169 169 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
4327307 4327307 SNP 1 A C CDS Rv3854c ethA 4327473 4326004 1469 - Asp 56 - Ala Asp56Ala gac/gcc 166 166 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
4327307 4327307 SNP 1 A G CDS Rv3854c ethA 4327473 4326004 1469 - Asp 56 - Gly Asp56Gly gac/ggc 166 166 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
4327334 4327334 SNP 1 T C CDS Rv3854c ethA 4327473 4326004 1469 - Leu 47 - Ser Leu47Ser ttg/tcg 139 139 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
4327343 4327343 SNP 1 C T CDS Rv3854c ethA 4327473 4326004 1469 - Thr 44 - Ile Thr44Ile acc/atc 130 130 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
4327349 4327349 SNP 1 G T CDS Rv3854c ethA 4327473 4326004 1469 - Gly 42 - Val Gly42Val ggc/gtc 124 124 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
4327349 4327349 SNP 1 G A CDS Rv3854c ethA 4327473 4326004 1469 - Gly 42 - Asp Gly42Asp ggc/gac 124 124 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
4327350 4327350 SNP 1 G A CDS Rv3854c ethA 4327473 4326004 1469 - Gly 42 - Ser Gly42Ser ggc/agc 123 123 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
4327380 4327380 SNP 1 T G CDS Rv3854c ethA 4327473 4326004 1469 - Tyr 32 - Asp Tyr32Asp tac/gac 93 93 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
4327416 4327416 SNP 1 G T CDS Rv3854c ethA 4327473 4326004 1469 - Ala 20 - Ser Ala20Ser gcc/tcc 57 57 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
4327416 4327416 SNP 1 G C CDS Rv3854c ethA 4327473 4326004 1469 - Ala 20 - Pro Ala20Pro gcc/ccc 57 57 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
4327442 4327442 SNP 1 G T CDS Rv3854c ethA 4327473 4326004 1469 - Gly 11 - Val Gly11Val ggc/gtc 31 31 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
4327442 4327442 SNP 1 G A CDS Rv3854c ethA 4327473 4326004 1469 - Gly 11 - Asp Gly11Asp ggc/gac 31 31 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
4327464 4327464 SNP 1 C A CDS Rv3854c ethA 4327473 4326004 1469 - His 4 - Asn His4Asn cac/aac 9 9 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
4327472 4327472 SNP 1 T C CDS Rv3854c ethA 4327473 4326004 1469 - Met 1 - Thr Met1Thr atg/acg 1 1 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
4326533 4326533 SNP 1 C T CDS Rv3854c ethA 4327473 4326004 1469 - Thr 314 - Ile Thr314Ile acc/atc 940 940 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
4326980 4326980 SNP 1 A C CDS Rv3854c ethA 4327473 4326004 1469 - Gln 165 - Pro Gln165Pro cag/ccg 493 493 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
4326659 4326659 SNP 1 T C CDS Rv3854c ethA 4327473 4326004 1469 - Leu 272 - Pro Leu272Pro cta/cca 814 814 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
4326317 4326317 SNP 1 A G CDS Rv3854c ethA 4327473 4326004 1469 - Tyr 386 - Cys Tyr386Cys tac/tgc 1156 1156 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
4326093 4326093 SNP 1 T C CDS Rv3854c ethA 4327473 4326004 1469 - Tyr 461 - His Tyr461His tac/cac 1380 1380 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
4327343 4327343 SNP 1 C A CDS Rv3854c ethA 4327473 4326004 1469 - Thr 44 - Asn Thr44Asn acc/acc 130 130 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
4327292 4327292 SNP 1 C T CDS Rv3854c ethA 4327473 4326004 1469 - Thr 61 - Met Thr61Met acg/atg 181 181 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - low-level ETH-R
4327319 4327319 SNP 1 G A CDS Rv3854c ethA 4327473 4326004 1469 - Gly 52 - Glu Gly52Glu gga/gaa 154 154 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
4326452 4326452 SNP 1 C T CDS Rv3854c ethA 4327473 4326004 1469 - Ala 341 - Val Ala341Val gca/gta 1021 1021 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
4326719 4326719 SNP 1 C A CDS Rv3854c ethA 4327473 4326004 1469 - Ala 252 - Asp Ala252Asp gcc/gac 754 754 ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
6734 6734 SNP 1 A G CDS Rv0005 gyrB 5240 7267 2027 + Asn 499 - Asp Asn499Asp aac/gac 1495 1495 fluoroquinolones (FQ) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
6737 6737 SNP 1 A C CDS Rv0005 gyrB 5240 7267 2027 + Thr 500 - Pro Thr500Pro acc/ccc 1498 1498 fluoroquinolones (FQ) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - low MFX and LFX MIC increase
6741 6741 SNP 1 A T CDS Rv0005 gyrB 5240 7267 2027 + Glu 501 - Val Glu501Val gaa/gta 1502 1502 fluoroquinolones (FQ) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
6736 6736 SNP 1 C A CDS Rv0005 gyrB 5240 7267 2027 + Asn 499 - Lys Asn499Lys aac/aaa 1497 1497 fluoroquinolones (FQ) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - low LFX MIC increase
6736 6736 SNP 1 C G CDS Rv0005 gyrB 5240 7267 2027 + Asn 499 - Lys Asn499Lys aac/aag 1497 1497 fluoroquinolones (FQ) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - low LFX MIC increase
6738 6738 SNP 1 C A CDS Rv0005 gyrB 5240 7267 2027 + Thr 500 - Asn Thr500Asn acc/aac 1499 1499 fluoroquinolones (FQ) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - low MFX and LFX MIC increase
6750 6750 SNP 1 C T CDS Rv0005 gyrB 5240 7267 2027 + Ala 504 - Val Ala504Val gcg/gtg 1511 1511 fluoroquinolones (FQ) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - low MFX and LFX MIC increase
6734 6734 SNP 1 A T CDS Rv0005 gyrB 5240 7267 2027 + Asn 499 - Tyr Asn499Tyr aac/tac 1495 1495 fluoroquinolones (FQ) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
6741 6741 SNP 1 A C CDS Rv0005 gyrB 5240 7267 2027 + Glu 501 - Ala Glu501Ala gaa/gca 1502 1502 fluoroquinolones (FQ) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
6741 6741 SNP 1 A G CDS Rv0005 gyrB 5240 7267 2027 + Glu 501 - Gly Glu501Gly gaa/gga 1502 1502 fluoroquinolones (FQ) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
7582 7582 SNP 1 A C CDS Rv0006 gyrA 7302 9818 2516 + Asp 94 - Ala Asp94Ala gac/gcc 281 281 fluoroquinolones (FQ) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - low MFX MIC increase, LFX not reviewed (WHO)
7582 7582 SNP 1 A G CDS Rv0006 gyrA 7302 9818 2516 + Asp 94 - Gly Asp94Gly gac/ggc 281 281 fluoroquinolones (FQ) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
7570 7570 SNP 1 C T CDS Rv0006 gyrA 7302 9818 2516 + Ala 90 - Val Ala90Val gcg/gtg 269 269 fluoroquinolones (FQ) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - low MFX MIC increase, LFX not reviewed (WHO)
7521 7521 SNP 1 G T CDS Rv0006 gyrA 7302 9818 2516 + Ala 74 - Ser Ala74Ser gcc/tcc 220 220 fluoroquinolones (FQ) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - low-level MFX and LFX
7563 7563 SNP 1 G T CDS Rv0006 gyrA 7302 9818 2516 + Gly 88 - Cys Gly88Cys ggc/tgc 262 262 fluoroquinolones (FQ) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
7566 7568 SNP 1 G A CDS Rv0006 gyrA 7302 9818 2516 + Asp 89 - Asn Asp89Asn gac/aac 265 265 fluoroquinolones (FQ) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - moderate MFX MIC increase, LFX not reviewed (WHO)
7581 7581 SNP 1 G C CDS Rv0006 gyrA 7302 9818 2516 + Asp 94 - His Asp94His gac/cac 280 280 fluoroquinolones (FQ) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
7581 7581 SNP 1 G A CDS Rv0006 gyrA 7302 9818 2516 + Asp 94 - Asn Asp94Asn gac/aac 280 280 fluoroquinolones (FQ) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
7581 7581 SNP 1 G T CDS Rv0006 gyrA 7302 9818 2516 + Asp 94 - Tyr Asp94Tyr gac/tac 280 280 fluoroquinolones (FQ) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - moderate MFX MIC increase, LFX not reviewed (WHO)
7564 7564 SNP 1 G C CDS Rv0006 gyrA 7302 9818 2516 + Gly 88 - Ala Gly88Ala ggc/gcc 263 263 fluoroquinolones (FQ) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
7582 7582 SNP 1 A T CDS Rv0006 gyrA 7302 9818 2516 + Asp 94 - Val Asp94Val gac/gtc 281 281 fluoroquinolones (FQ) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
7572 7572 SNP 1 T C CDS Rv0006 gyrA 7302 9818 2516 + Ser 91 - Pro Ser91Pro tcg/ccg 271 271 fluoroquinolones (FQ) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2102369 2102369 SNP 1 G A CDS Rv1854c ndh 2103042 2101651 1391 - Gly 225 - Asp Gly225Asp ggc/gac 673 673 isoniazid (INH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2102193 2102193 SNP 1 C T CDS Rv1854c ndh 2103042 2101651 1391 - Arg 284 - Trp Arg284Trp cgg/tgg 849 849 isoniazid (INH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2154001 2154001 SNP 1 T C CDS Rv1908c katG 2156111 2153889 2222 - Leu 704 - Ser Leu704Ser ttg/tcg 2110 2110 isoniazid (INH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2154014 2154014 SNP 1 T A CDS Rv1908c katG 2156111 2153889 2222 - Ser 700 - Pro Ser700Pro tcc/acc 2097 2097 isoniazid (INH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2154214 2154214 SNP 1 T C CDS Rv1908c katG 2156111 2153889 2222 - Val 633 - Ala Val633Ala gtc/gcc 1897 1897 isoniazid (INH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2154232 2154232 SNP 1 T C CDS Rv1908c katG 2156111 2153889 2222 - Leu 627 - Pro Leu627Pro ctg/ccg 1879 1879 isoniazid (INH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2154868 2154868 SNP 1 T C CDS Rv1908c katG 2156111 2153889 2222 - Leu 415 - Pro Leu415Pro ctg/ccg 1243 1243 isoniazid (INH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2156110 2155110 SNP 1 T C CDS Rv1908c katG 2156111 2153889 2222 - Val 1 - Ala Val1Ala gtg/gcg 1 1 isoniazid (INH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2155130 2155130 SNP 1 T A CDS Rv1908c katG 2156111 2153889 2222 - Trp 328 - Arg Trp328Arg tgg/agg 981 981 isoniazid (INH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2155214 2155214 SNP 1 T A CDS Rv1908c katG 2156111 2153889 2222 - Trp 300 - Arg Trp300Arg tgg/agg 897 897 isoniazid (INH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2155541 2155541 SNP 1 T G CDS Rv1908c katG 2156111 2153889 2222 - Trp 191 - Gly Trp191Gly tgg/ggg 570 570 isoniazid (INH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2155541 2155541 SNP 1 T A CDS Rv1908c katG 2156111 2153889 2222 - Trp 191 - Arg Trp191Arg tgg/agg 570 570 isoniazid (INH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2155631 2155631 SNP 1 T A CDS Rv1908c katG 2156111 2153889 2222 - Trp 161 - Arg Trp161Arg tgg/agg 480 480 isoniazid (INH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2155636 2155636 SNP 1 T C CDS Rv1908c katG 2156111 2153889 2222 - Leu 159 - Pro Leu159Pro ctc/ccc 475 475 isoniazid (INH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2155844 2155844 SNP 1 T A CDS Rv1908c katG 2156111 2153889 2222 - Trp 90 - Arg Trp90Arg tgg/agg 267 267 isoniazid (INH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2154597 2154597 SNP 1 G A CDS Rv1908c katG 2156111 2153889 2222 - Trp 505 - STOP Trp505STOP tgg/tga 1514 1514 isoniazid (INH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2154598 2154598 SNP 1 G A CDS Rv1908c katG 2156111 2153889 2222 - Trp 505 - STOP Trp505STOP tgg/tag 1513 1513 isoniazid (INH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2154908 2154908 SNP 1 G T CDS Rv1908c katG 2156111 2153889 2222 - Glu 402 - STOP Glu402STOP gag/tag 1203 1203 isoniazid (INH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2155129 2155129 SNP 1 G T CDS Rv1908c katG 2156111 2153889 2222 - Trp 328 - Leu Trp328Leu tgg/ttg 982 982 isoniazid (INH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2155168 2155168 SNP 1 G T CDS Rv1908c katG 2156111 2153889 2222 - Ser 315 - Ile Ser315Ile agc/atc 943 943 isoniazid (INH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2155168 2155168 SNP 1 G A CDS Rv1908c katG 2156111 2153889 2222 - Ser 315 - Asn Ser315Asn agc/aac 943 943 isoniazid (INH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2155168 2155168 SNP 1 G C CDS Rv1908c katG 2156111 2153889 2222 - Ser 315 - Thr Ser315Thr agc/acc 943 943 isoniazid (INH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2155212 2155212 SNP 1 G C CDS Rv1908c katG 2156111 2153889 2222 - Trp 300 - Cys Trp300Cys tgg/tgc 899 899 isoniazid (INH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2155212 2155212 SNP 1 G T CDS Rv1908c katG 2156111 2153889 2222 - Trp 300 - Cys Trp300Cys tgg/tgt 899 899 isoniazid (INH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2155213 2155213 SNP 1 G C CDS Rv1908c katG 2156111 2153889 2222 - Trp 300 - Ser Trp300Ser tgg/tcg 898 898 isoniazid (INH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2155222 2155222 SNP 1 G T CDS Rv1908c katG 2156111 2153889 2222 - Gly 297 - Val Gly297Val ggc/gtc 889 889 isoniazid (INH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2155276 2155276 SNP 1 G A CDS Rv1908c katG 2156111 2153889 2222 - Gly 279 - Asp Gly279Asp ggc/gac 835 835 isoniazid (INH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2155568 2155568 SNP 1 G A CDS Rv1908c katG 2156111 2153889 2222 - Gly 182 - Arg Gly182Arg ggg/agg 543 543 isoniazid (INH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2155689 2155689 SNP 1 G C CDS Rv1908c katG 2156111 2153889 2222 - Leu 141 - Phe Leu141Phe ttg/ttc 422 422 isoniazid (INH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2155689 2155689 SNP 1 G T CDS Rv1908c katG 2156111 2153889 2222 - Leu 141 - Phe Leu141Phe ttg/ttt 422 422 isoniazid (INH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2155738 2155738 SNP 1 G A CDS Rv1908c katG 2156111 2153889 2222 - Gly 125 - Asp Gly125Asp ggc/gac 373 373 isoniazid (INH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2155801 2155801 SNP 1 G A CDS Rv1908c katG 2156111 2153889 2222 - Arg 104 - Gln Arg104Gln cgg/cag 310 310 isoniazid (INH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2154271 2154271 SNP 1 C A CDS Rv1908c katG 2156111 2153889 2222 - Ala 614 - Glu Ala614Glu gcg/gag 1840 1840 isoniazid (INH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2154670 2154670 SNP 1 C T CDS Rv1908c katG 2156111 2153889 2222 - Ser 481 - Leu Ser481Leu tcg/ttg 1441 1441 isoniazid (INH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2155417 2155417 SNP 1 C G CDS Rv1908c katG 2156111 2153889 2222 - Pro 232 - Arg Pro232Arg ccg/cgg 694 694 isoniazid (INH) "WHO2018;Yadon et al 10.1038/s41467-017-00721-2" - -
2155573 2155573 SNP 1 C A CDS Rv1908c katG 2156111 2153889 2222 - Thr 180 - Lys Thr180Lys acg/aag 538 538 isoniazid (INH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2155783 2155783 SNP 1 C T CDS Rv1908c katG 2156111 2153889 2222 - Ala 110 - Val Ala110Val gcc/gtc 328 328 isoniazid (INH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2155786 2155786 SNP 1 C T CDS Rv1908c katG 2156111 2153889 2222 - Ala 109 - Val Ala109Val gct/gtc 325 325 isoniazid (INH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2155169 2155169 SNP 1 A G CDS Rv1908c katG 2156111 2153889 2222 - Ser 315 - Gly Ser315Gly agc/ggc 942 942 isoniazid (INH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2155208 2155208 SNP 1 A C CDS Rv1908c katG 2156111 2153889 2222 - Thr 302 - Arg Thr302Arg agc/cgc 903 903 isoniazid (INH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2155687 2155687 SNP 1 A G CDS Rv1908c katG 2156111 2153889 2222 - Asp 142 - Gly Asp142Gly gac/ggc 424 424 isoniazid (INH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2155699 2155699 SNP 1 A G CDS Rv1908c katG 2156111 2153889 2222 - Asn 138 - Ser Asn138Ser aac/agc 412 412 isoniazid (INH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2155630 2155631 SNP 2 TG CA CDS Rv1908c katG 2156111 2153889 2222 - Trp 161 - Gln Trp161Gln tgg/cag 481 482 isoniazid (INH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2153926 2153926 SNP 1 A G CDS Rv1908c katG 2156111 2153889 2222 - Asp 729 - Gly Asp729Gly gac/ggc 2185 2185 isoniazid (INH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
2153960 2153960 SNP 1 C T CDS Rv1908c katG 2156111 2153889 2222 - Pro 718 - Ser Pro718Ser ccg/tcg 2151 2151 isoniazid (INH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
2154028 2154028 SNP 1 A C CDS Rv1908c katG 2156111 2153889 2222 - Asp 695 - Ala Asp695Ala gac/gcc 2083 2083 isoniazid (INH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
2154045 2154045 SNP 1 G C CDS Rv1908c katG 2156111 2153889 2222 - Trp 689 - Cys Trp689Cys tgg/tgc 2066 2066 isoniazid (INH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
2154045 2154045 SNP 1 G T CDS Rv1908c katG 2156111 2153889 2222 - Trp 689 - Cys Trp689Cys tgg/tgt 2066 2066 isoniazid (INH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
2154108 2154108 SNP 1 G C CDS Rv1908c katG 2156111 2153889 2222 - Trp 668 - Cys Trp668Cys tgg/tgc 2003 2003 isoniazid (INH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
2154108 2154108 SNP 1 G T CDS Rv1908c katG 2156111 2153889 2222 - Trp 668 - Cys Trp668Cys tgg/tgt 2003 2003 isoniazid (INH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
2154163 2154163 SNP 1 C T CDS Rv1908c katG 2156111 2153889 2222 - Ser 650 - Phe Ser650Phe tcc/ttc 1948 1948 isoniazid (INH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
2154571 2154571 SNP 1 T C CDS Rv1908c katG 2156111 2153889 2222 - Leu 514 - Pro Leu514Pro ctg/ccg 1540 1540 isoniazid (INH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
2154671 2154671 SNP 1 T G CDS Rv1908c katG 2156111 2153889 2222 - Ser 481 - Ala Ser481Ala tcg/gcg 1440 1440 isoniazid (INH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
2154772 2154772 SNP 1 A G CDS Rv1908c katG 2156111 2153889 2222 - His 447 - Arg His447Arg cac/cgc 1339 1339 isoniazid (INH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
2154876 2154876 SNP 1 G C CDS Rv1908c katG 2156111 2153889 2222 - Trp 412 - Cys Trp412Cys tgg/tgc 1235 1235 isoniazid (INH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
2154876 2154876 SNP 1 G T CDS Rv1908c katG 2156111 2153889 2222 - Trp 412 - Cys Trp412Cys tgg/tgt 1235 1235 isoniazid (INH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
2154915 2154915 SNP 1 A C CDS Rv1908c katG 2156111 2153889 2222 - Glu 399 - Asp Glu399Asp gaa/gac 1196 1196 isoniazid (INH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
2154915 2154915 SNP 1 A T CDS Rv1908c katG 2156111 2153889 2222 - Glu 399 - Asp Glu399Asp gaa/gat 1196 1196 isoniazid (INH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
2154934 2154934 SNP 1 T G CDS Rv1908c katG 2156111 2153889 2222 - Ile 393 - Ser Ile393Ser atc/agc 1177 1177 isoniazid (INH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
2154955 2154955 SNP 1 T A CDS Rv1908c katG 2156111 2153889 2222 - Val 386 - Glu Val386Glu gtg/gag 1156 1156 isoniazid (INH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
2154967 2154967 SNP 1 T G CDS Rv1908c katG 2156111 2153889 2222 - Leu 382 - Arg Leu382Arg ctc/cgc 1144 1144 isoniazid (INH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
2155051 2155051 SNP 1 C T CDS Rv1908c katG 2156111 2153889 2222 - Thr 354 - Ile Thr354Ile acc/atc 1060 1060 isoniazid (INH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
2155087 2155087 SNP 1 A C CDS Rv1908c katG 2156111 2153889 2222 - Glu 342 - Ala Glu342Ala gag/gcg 1024 1024 isoniazid (INH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
2155109 2155109 SNP 1 A G CDS Rv1908c katG 2156111 2153889 2222 - Ile 335 - Val Ile335Val atc/gtc 1002 1002 isoniazid (INH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
2155126 2155126 SNP 1 A C CDS Rv1908c katG 2156111 2153889 2222 - Asp 329 - Ala Asp329Ala gac/gcc 985 985 isoniazid (INH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
2155129 2155129 SNP 1 G C CDS Rv1908c katG 2156111 2153889 2222 - Trp 328 - Ser Trp328Ser tgg/tcg 982 982 isoniazid (INH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
2155582 2155582 SNP 1 G C CDS Rv1908c katG 2156111 2153889 2222 - Gly 177 - Ala Gly177Ala ggc/gcc 529 529 isoniazid (INH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
2155582 2155582 SNP 1 G T CDS Rv1908c katG 2156111 2153889 2222 - Gly 177 - Val Gly177Val ggc/gtc 529 529 isoniazid (INH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
2155665 2155665 SNP 1 G C CDS Rv1908c katG 2156111 2153889 2222 - Trp 149 - Cys Trp149Cys tgg/tgc 446 446 isoniazid (INH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
2155665 2155665 SNP 1 G T CDS Rv1908c katG 2156111 2153889 2222 - Trp 149 - Cys Trp149Cys tgg/tgt 446 446 isoniazid (INH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
2155819 2155819 SNP 1 A G CDS Rv1908c katG 2156111 2153889 2222 - Tyr 98 - Cys Tyr98Cys tac/tgc 292 292 isoniazid (INH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
2155955 2155955 SNP 1 G A CDS Rv1908c katG 2156111 2153889 2222 - Ala 53 - Thr Ala53Thr gcc/acc 156 156 isoniazid (INH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
2156006 2156006 SNP 1 C G CDS Rv1908c katG 2156111 2153889 2222 - Gln 36 - Glu Gln36Glu cag/gag 105 105 isoniazid (INH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
2156090 2156090 SNP 1 A G CDS Rv1908c katG 2156111 2153889 2222 - Ile 8 - Val Ile8Val att/gtt 21 21 isoniazid (INH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes -
1673424 1673424 del 1 A GAP PROM Rv1483 fabG1 1673440 1674183 743 + - - - - -16_del_a -16_del_a -16 -16 isoniazid (INH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - consider low-level INH-R if not linked (no support), consider ETH-R (no support)
1673424 1673424 SNP 1 A G PROM Rv1483 fabG1 1673440 1674183 743 + - - - - -16a>g -16a>g -16 -16 isoniazid (INH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" yes consider ETH-R (no support)
1673423 1673423 SNP 1 G T PROM Rv1483 fabG1 1673440 1674183 743 + - - - - -17g>t -17g>t -17 -17 isoniazid (INH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - low-level INH-R if not linked, consider ETH-R (no support)
1673432 1673432 SNP 1 T A PROM Rv1483 fabG1 1673440 1674183 743 + - - - - -8t>a -8t>a -8 -8 isoniazid (INH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - low-level INH-R if not linked, consider ETH-R (no support)
1673432 1673432 SNP 1 T G PROM Rv1483 fabG1 1673440 1674183 743 + - - - - -8t>g -8t>g -8 -8 isoniazid (INH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - low-level INH-R if not linked, consider ETH-R (no support)
1673432 1673432 SNP 1 T C PROM Rv1483 fabG1 1673440 1674183 743 + - - - - -8t>c -8t>c -8 -8 isoniazid (INH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - low-level INH-R if not linked, consider ETH-R (no support)
1674262 1674262 SNP 1 A G CDS Rv1484 inhA 1674202 1675011 809 + Ile 21 - Val Ile21Val atc/gtc 61 61 isoniazid (INH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - consider ETH-R (no support)
1674484 1674485 SNP 2 AT CC CDS Rv1484 inhA 1674202 1675011 809 + Ile 95 - Pro Ile95Pro att/cct 283 284 isoniazid (INH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - consider ETH-R (no support)
1674248 1674248 SNP 1 T C CDS Rv1484 inhA 1674202 1675011 809 + Ile 16 - Thr Ile16Thr atc/acc 47 47 isoniazid (INH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - consider ETH-R (no support)
1674263 1674263 SNP 1 T C CDS Rv1484 inhA 1674202 1675011 809 + Ile 21 - Thr Ile21Thr atc/acc 62 62 isoniazid (INH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - consider ETH-R (no support)
1674481 1674481 SNP 1 T G CDS Rv1484 inhA 1674202 1675011 809 + Ser 94 - Ala Ser94Ala tcg/gcg 280 280 isoniazid (INH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - consider ETH-R (no support)
1674782 1674782 SNP 1 T C CDS Rv1484 inhA 1674202 1675011 809 + Ile 194 - Thr Ile194Thr atc/acc 581 581 isoniazid (INH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - consider ETH-R (no support)
737857 737857 SNP 1 G A CDS Rv0643c mmaA3 738149 737268 881 - Gly 98 - Asp Gly98Asp ggc/gac 292 292 isoniazid (INH) ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
1673425 1673425 SNP 1 C T PROM Rv1483 fabG1 1673440 1674183 743 + - - - - -15c>t -15c>t -15 -15 isoniazid (INH) ethionamide (ETH) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - low-level INH-R if not linked
2715342 2715342 SNP 1 G A PROM Rv2416c eis 2715332 2714124 1208 - - - - - -10g>a -10g>a -10 -10 kanamycin (KAN) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2715342 2715342 SNP 1 G C PROM Rv2416c eis 2715332 2714124 1208 - - - - - -10g>c -10g>c -10 -10 kanamycin (KAN) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2715369 2715369 SNP 1 G T PROM Rv2416c eis 2715332 2714124 1208 - - - - - -37g>t -37g>t -37 -37 kanamycin (KAN) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - moderate MIC increase (WHO)
2715344 2715344 SNP 1 C T PROM Rv2416c eis 2715332 2714124 1208 - - - - - -12c>t -12c>t -12 -12 kanamycin (KAN) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - low MIC increase (WHO)
6621 6621 SNP 1 A C CDS Rv0005 gyrB 5240 7267 2027 + Asp 461 - Ala Asp461Ala gac/gcc 1382 1382 levofloxacin (LFX) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - low LFX MIC increase
6575 6575 SNP 1 C T CDS Rv0005 gyrB 5240 7267 2027 + Arg 446 - Cys Arg446Cys cgt/tgt 1336 1336 levofloxacin (LFX) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - low LFX MIC increase
6620 6620 SNP 1 G C CDS Rv0005 gyrB 5240 7267 2027 + Asp 461 - His Asp461His gac/cac 1381 1381 levofloxacin (LFX) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
6620 6620 SNP 1 G A CDS Rv0005 gyrB 5240 7267 2027 + Asp 461 - Asn Asp461Asn gac/aac 1381 1381 levofloxacin (LFX) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
6749 6749 SNP 1 G A CDS Rv0005 gyrB 5240 7267 2027 + Ala 504 - Thr Ala504Thr gcg/acg 1510 1510 levofloxacin (LFX) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - low LFX MIC increase
801268 801268 SNP 1 T C CDS Rv0701 rplC 800809 801462 653 + Cys 154 - Arg Cys154Arg tgt/ctg 460 460 linezolid (LZD) "WHO2018;Yadon et al 10.1038/s41467-017-00721-2" - -
1476346 1476346 SNP 1 A T RNA Rvnr02 rrl 1473658 1476795 3137 + - - - - 2689a>t 2689a>t 2689 2689 linezolid (LZD) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
1476467 1476467 SNP 1 A C RNA Rvnr02 rrl 1473658 1476795 3137 + - - - - 2810a>c 2810a>c 2810 2810 linezolid (LZD) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
1475718 1475718 SNP 1 G T RNA Rvnr02 rrl 1473658 1476795 3137 + - - - - 2061g>t 2061g>t 2061 2061 linezolid (LZD) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
1475927 1475927 SNP 1 G C RNA Rvnr02 rrl 1473658 1476795 3137 + - - - - 2270g>c 2270g>c 2270 2270 linezolid (LZD) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
1475956 1475956 SNP 1 G T RNA Rvnr02 rrl 1473658 1476795 3137 + - - - - 2299g>t 2299g>t 2299 2299 linezolid (LZD) "WALKER;Yadon et al 10.1038/s41467-017-00721-2" - -
1476104 1476104 SNP 1 G T RNA Rvnr02 rrl 1473658 1476795 3137 + - - - - 2447g>t 2447g>t 2447 2447 linezolid (LZD) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
1476233 1476233 SNP 1 G T RNA Rvnr02 rrl 1473658 1476795 3137 + - - - - 2576g>t 2576g>t 2576 2576 linezolid (LZD) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
1476403 1476403 SNP 1 G A RNA Rvnr02 rrl 1473658 1476795 3137 + - - - - 2746g>a 2746g>a 2746 2746 linezolid (LZD) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
1476471 1476471 SNP 1 G T RNA Rvnr02 rrl 1473658 1476795 3137 + - - - - 2814g>t 2814g>t 2814 2814 linezolid (LZD) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
1476346 1476346 SNP 1 A T RNA Rvnr02 rrl 1473658 1476795 3137 + - - - - 2689a>t 2689a>t 2689 2689 linezolid (LZD) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
6742 6742 SNP 1 A C CDS Rv0005 gyrB 5240 7267 2027 + Glu 501 - Asp Glu501Asp gaa/gac 1503 1503 moxifloxacin (MFX) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
6742 6742 SNP 1 A T CDS Rv0005 gyrB 5240 7267 2027 + Glu 501 - Asp Glu501Asp gaa/gat 1503 1503 moxifloxacin (MFX) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2747052 2747052 SNP 1 G C CDS Rv2447c folC 2747598 2746135 1463 - Ala 183 - Pro Ala183Pro gcc/ccc 546 546 para-aminosalicylic acid (PAS) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2747141 2747141 SNP 1 A C CDS Rv2447c folC 2747598 2746135 1463 - Glu 153 - Ala Glu153Ala gag/gcg 457 457 para-aminosalicylic acid (PAS) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2747141 2747141 SNP 1 A G CDS Rv2447c folC 2747598 2746135 1463 - Glu 153 - Gly Glu153Gly gag/ggg 457 457 para-aminosalicylic acid (PAS) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2747480 2747480 SNP 1 A G CDS Rv2447c folC 2747598 2746135 1463 - Glu 40 - Gly Glu40Gly gag/ggg 118 118 para-aminosalicylic acid (PAS) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2747145 2747145 SNP 1 T C CDS Rv2447c folC 2747598 2746135 1463 - Phe 152 - Leu Phe152Leu ttc/ctc 453 453 para-aminosalicylic acid (PAS) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2747144 2747144 SNP 1 T C CDS Rv2447c folC 2747598 2746135 1463 - Phe 152 - Ser Phe152Ser ttc/tcc 454 454 para-aminosalicylic acid (PAS) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2747471 2747472 SNP 2 AT GC CDS Rv2447c folC 2747598 2746135 1463 - Ile 43 - Ala Ile43Ala atc/gcc 127 128 para-aminosalicylic acid (PAS) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2747471 2747471 SNP 1 T C CDS Rv2447c folC 2747598 2746135 1463 - Ile 43 - Thr Ile43Thr atc/acc 127 127 para-aminosalicylic acid (PAS) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2747381 2747381 SNP 1 A G CDS Rv2447c folC 2747598 2746135 1463 - Asn 73 - Ser Asn73Ser aac/agc 217 217 para-aminosalicylic acid (PAS) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2747454 2747454 SNP 1 C T CDS Rv2447c folC 2747598 2746135 1463 - Arg 49 - Trp Arg49Trp cgg/tgg 144 144 para-aminosalicylic acid (PAS) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2747150 2747150 SNP 1 A G CDS Rv2447c folC 2747598 2746135 1463 - Ser 150 - Gly Ser150Gly agc/ggc 448 448 para-aminosalicylic acid (PAS) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2747150 2747150 SNP 1 A C CDS Rv2447c folC 2747598 2746135 1463 - Ser 150 - Arg Ser150Arg agc/cgc 448 448 para-aminosalicylic acid (PAS) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2986827 298627 SNP 1 C T CDS Rv2670c Rv2670c 2986840 2985731 1109 - Ala 5 - Val Ala5Val gca/gta 13 13 para-aminosalicylic acid (PAS) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - gene annotation: ribD-12g/a
3073957 3073957 SNP 1 T C CDS Rv2764c thyA 3074471 3073680 791 - Leu 172 - Pro Leu172Pro ctg/ccg 514 514 para-aminosalicylic acid (PAS) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
3073928 3073928 SNP 1 G C CDS Rv2764c thyA 3074471 3073680 791 - Ala 182 - Pro Ala182Pro gcg/ccg 543 543 para-aminosalicylic acid (PAS) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
3073697 3073697 SNP 1 G C CDS Rv2764c thyA 3074471 3073680 791 - Ala 259 - Pro Ala259Pro gct/cct 774 774 para-aminosalicylic acid (PAS) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
3074036 3074036 SNP 1 T C CDS Rv2764c thyA 3074471 3073680 791 - Cys 146 - Arg Cys146Arg tgt/cgt 435 435 para-aminosalicylic acid (PAS) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
3074044 3074044 SNP 1 T C CDS Rv2764c thyA 3074471 3073680 791 - Leu 143 - Pro Leu143Pro ctg/ccg 427 427 para-aminosalicylic acid (PAS) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
3074092 3074092 SNP 1 G T CDS Rv2764c thyA 3074471 3073680 791 - Arg 127 - Leu Arg127Leu cgc/ctc 379 379 para-aminosalicylic acid (PAS) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
3073808 3073808 SNP 1 C G CDS Rv2764c thyA 3074471 3073680 791 - Arg 222 - Gly Arg222Gly cgc/ggc 663 663 para-aminosalicylic acid (PAS) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
3073690 3073690 SNP 1 T G CDS Rv2764c thyA 3074471 3073680 791 - Val 261 - Gly Val261Gly gtc/ggc 781 781 para-aminosalicylic acid (PAS) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
3073685 3073685 SNP 1 G A CDS Rv2764c thyA 3074471 3073680 791 - Val 263 - Ile Val263Ile gta/ata 786 786 para-aminosalicylic acid (PAS) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
1417019 1417019 SNP 1 g a CDS Rv1267c embR 1417347 1416181 1167 - Cys 110 - Tyr Cys110Tyr tgc/tac 329 329 phylo (1) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
6112 6112 SNP 1 g c CDS Rv0005 gyrB 5240 7267 2028 + Met 291 - Ile Met291Ile atg/atc 873 873 phylo (1) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
8452 8452 SNP 1 c t CDS Rv0006 gyrA 7302 9818 2517 + Ala 384 - Val Ala384Val gca/gta 1151 1151 phylo (1) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
615938 615938 SNP 1 g a CDS Rv0524 hemL 614835 616223 1389 + Glu 368 - Glu Glu368Glu gag/gaa 1104 1104 phylo (1) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
763884 763884 SNP 1 c t CDS Rv0668 rpoC 763370 767320 3951 + Ala 172 - Val Ala172Val gcc/gtc 515 515 phylo (1) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
763886 763886 SNP 1 c a CDS Rv0668 rpoC 763370 767320 3951 + Arg 173 - Arg Arg173Arg cgg/agg 517 517 phylo (1) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
4241042 4241042 SNP 1 a g CDS Rv3793 embC 4239863 4243147 3285 + Asn 394 - Asp Asn394Asp aac/gac 1180 1180 phylo (1) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
4245969 4245969 SNP 1 c t CDS Rv3794 embA 4243233 4246517 3285 + Pro 913 - Ser Pro913Ser ccg/tcg 2737 2737 phylo (1) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
765171 765171 SNP 1 c t CDS Rv0668 rpoC 763370 767320 3951 + Pro 601 - Leu Pro601Leu ccg/ctg 1802 1802 phylo (1,1) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
4243848 4243848 SNP 1 g a CDS Rv3794 embA 4243233 4246517 3285 + Val 206 - Met Val206Met gtg/atg 616 616 phylo (1,1) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
4404247 4404247 SNP 1 g a CDS Rv3915 - 4403192 4404412 1221 + Leu 352 - Leu Leu352Leu ctg/cta 1056 1056 phylo (1,1) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
3021283 3021283 SNP 1 g a CDS Rv2707 - 3020573 3021547 975 + Arg 237 - Arg Arg237Arg cgg/cga 711 711 phylo (1,1,1) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
3216553 3216553 SNP 1 c t CDS Rv2907c rimM 3216891 3216361 531 - Val 113 - Val Val113Val gtc/gtt 339 339 phylo (1,1,1,1) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2622402 2622402 SNP 1 c t CDS Rv2343c dnaG 2622452 2620533 1920 - Ala 17 - Ala Ala17Ala gcc/gct 51 51 phylo (1,1,2) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
6124 6124 SNP 1 c t CDS Rv0005 gyrB 5240 7267 2028 + Ala 295 - Ala Ala295Ala gcc/gct 885 885 phylo (1,1,2) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
1491275 1491275 SNP 1 c t CDS Rv1326c glgB 1492312 1490117 2196 - His 346 - His His346His cac/cat 1038 1038 phylo (1,1,3) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
4407780 4407780 SNP 1 g a CDS Rv3919c gid 4408202 4407528 675 - Ala 141 - Ala Ala141Ala gcg/gca 423 423 phylo (1,1,3) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
765230 765230 SNP 1 g a CDS Rv0668 rpoC 763370 767320 3951 + Ala 621 - Thr Ala621Thr gcg/acg 1861 1861 phylo (1,1,3) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
9260 9260 SNP 1 g c CDS Rv0006 gyrA 7302 9818 2517 + Leu 653 - Leu Leu653Leu ctg/ctc 1959 1959 phylo (1,2,1) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
3479545 3479545 SNP 1 c a CDS Rv3111 moaC1 3479171 3479683 513 + Ala 125 - Ala Ala125Ala gcc/gca 375 375 phylo (1,2,1) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
4244420 4244420 SNP 1 g c CDS Rv3794 embA 4243233 4246517 3285 + Val 396 - Val Val396Val gtg/gtc 1188 1188 phylo (1,2,1) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
3470377 3470377 SNP 1 g a CDS Rv3101c ftsX 3470679 3469786 894 - Gln 101 - Gln Gln101Gln cag/caa 303 303 phylo (1,2,2) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
4326439 4326439 SNP 1 c a CDS Rv3854c ethA 4327473 4326004 1470 - Asn 345 - Lys Asn345Lys aac/aaa 1035 1035 phylo (1,2,2) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
4238120 4238120 SNP 1 g a CDS Rv3792 aftA 4237932 4239863 1932 + Gln 63 - Gln Gln63Gln cag/caa 189 189 phylo (1,2,2) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
497491 497491 SNP 1 c t CDS Rv0411c glnH 498300 497314 987 - Asp 270 - Asp Asp270Asp gac/gat 810 810 phylo (2) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
1881090 1881090 SNP 1 c t CDS Rv1661 pks7 1875304 1881684 6381 + Gly 1929 - Gly Gly1929Gly ggc/ggt 5787 5787 phylo (2,1) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
3513538 3513538 SNP 1 a t CDS Rv3148 nuoD 3513338 3514660 1323 + Glu 67 - Asp Glu67Asp gaa/gat 201 201 phylo (2,1) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
4246088 4246088 SNP 1 a g CDS Rv3794 embA 4243233 4246517 3285 + Gln 952 - Gln Gln952Gln caa/cag 2856 2856 phylo (2,1) "WALKER;Yadon et al 10.1038/s41467-017-00721-2" - -
2505085 2505085 SNP 1 c t CDS Rv2231c cobC 2505699 2504605 1095 - Ala 205 - Ala Ala205Ala gcc/gct 615 615 phylo (2,2) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
797736 797736 SNP 1 c t CDS Rv0697 - 796933 798372 1440 + Leu 268 - Leu Leu268Leu ctc/ctt 804 804 phylo (2,2,1) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
4248115 4248115 SNP 1 c t CDS Rv3795 embB 4246514 4249810 3297 + Asp 534 - Asp Asp534Asp gac/gat 1602 1602 phylo (2,2,1,1) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
3836274 3836274 SNP 1 c t CDS Rv3417c groEL1 3836891 3835272 1620 - Phe 206 - Phe Phe206Phe ttc/ttt 618 618 phylo (2,2,1,2) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
346693 346693 SNP 1 g t CDS Rv0284 eccC3 345635 349627 3993 + Ser 353 - Ser Ser353Ser tcg/tct 1059 1059 phylo (2,2,2) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
762434 762434 SNP 1 t g CDS Rv0667 rpoB 759807 763325 3519 + Gly 876 - Gly Gly876Gly ggt/ggg 2628 2628 phylo (3) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
3273107 3273107 SNP 1 c a CDS Rv2936 drrA 3272214 3273209 996 + Ala 298 - Ala Ala298Ala gcc/gca 894 894 phylo (3) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
1084911 1084911 SNP 1 c t CDS Rv0973c accA2 1085750 1083747 2004 - Tyr 280 - Tyr Tyr280Tyr tac/tat 840 840 phylo (3,1,1) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
4241562 4241562 SNP 1 g a CDS Rv3793 embC 4239863 4243147 3285 + Arg 567 - His Arg567His cgc/cac 1700 1700 phylo (3,1,1) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
3722702 3722702 SNP 1 c g CDS Rv3336c trpS 3723631 3722621 1011 - Leu 310 - Leu Leu310Leu ctc/ctg 930 930 phylo (3,1,2) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
1237818 1237818 SNP 1 g c CDS Rv1111c - 1238192 1237209 984 - Leu 125 - Leu Leu125Leu ctg/ctc 375 375 phylo (3,1,2,1) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2874344 2874344 SNP 1 c t CDS Rv2555c alaS 2876485 2873771 2715 - Arg 714 - Arg Arg714Arg cgc/cgt 2142 2142 phylo (3,1,2,2) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
4326176 4326176 SNP 1 a c CDS Rv3854c ethA 4327473 4326004 1470 - Glu 433 - Ala Glu433Ala gag/gcg 1298 1298 phylo (3,1,2,2) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
9611 9611 SNP 1 c t CDS Rv0006 gyrA 7302 9818 2517 + Asp 770 - Asp Asp770Asp gac/gat 2310 2310 phylo (3,1,2,2) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
763031 763031 SNP 1 t c CDS Rv0667 rpoB 759807 763325 3519 + Ala 1075 - Ala Ala1075Ala gct/gcc 3225 3225 phylo (4) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
62657 62657 SNP 1 g a CDS Rv0058 dnaB 60396 63020 2625 + Pro 754 - Pro Pro754Pro ccg/cca 2262 2262 phylo (4,1) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
765150 765150 SNP 1 g a CDS Rv0668 rpoC 763370 767320 3951 + Gly 594 - Glu Gly594Glu ggg/gag 1781 1781 phylo (4,1) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
514245 514245 SNP 1 g a CDS Rv0425c ctpH 515321 510702 4620 - Val 359 - Val Val359Val gtg/gta 1077 1077 phylo (4,1,1) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
1850119 1850119 SNP 1 g a CDS Rv1640c lysX 1852035 1848517 3519 - Thr 639 - Thr Thr639Thr acg/aca 1917 1917 phylo (4,1,1,1) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
4240897 4240897 SNP 1 c g CDS Rv3793 embC 4239863 4243147 3285 + Arg 345 - Arg Arg345Arg cgc/cgg 1035 1035 phylo (4,1,1,1) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
541048 541048 SNP 1 a c CDS Rv0450c mmpL4 541491 538588 2904 - Ser 148 - Ser Ser148Ser tca/tcc 444 444 phylo (4,1,1,2) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
4246930 4246930 SNP 1 g c CDS Rv3795 embB 4246514 4249810 3297 + Gln 139 - His Gln139His cag/cac 417 417 phylo (4,1,1,2) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
4229087 4229087 SNP 1 c t CDS Rv3782 glfT1 4228347 4229261 915 + Asn 247 - Asn Asn247Asn aac/aat 741 741 phylo (4,1,1,3) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
891756 891756 SNP 1 t c CDS Rv0798c cfp29 892269 891472 798 - Leu 172 - Leu Leu172Leu ttg/ctg 514 514 phylo (4,1,2) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
107794 107794 SNP 1 c t CDS Rv0098 fcoT 107600 108151 552 + Ala 65 - Ala Ala65Ala gcc/gct 195 195 phylo (4,1,2,1) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
4239298 4239298 SNP 1 c t CDS Rv3792 aftA 4237932 4239863 1932 + Ala 456 - Val Ala456Val gcc/gtc 1367 1367 phylo (4,1,2,1) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2411730 2411730 SNP 1 c g CDS Rv2152c murC 2412122 2410638 1485 - Ser 131 - Ser Ser131Ser tcc/tcg 393 393 phylo (4,2) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
783601 783601 SNP 1 a c CDS Rv0684 fusA1 782485 784590 2106 + Arg 373 - Arg Arg373Arg agg/cgg 1117 1117 phylo (4,2,1) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
1487796 1487796 SNP 1 c a CDS Rv1324 - 1487161 1488075 915 + Ile 212 - Ile Ile212Ile atc/ata 636 636 phylo (4,2,2) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
1455780 1455780 SNP 1 t c CDS Rv1299 prfA 1455495 1456568 1074 + Leu 96 - Leu Leu96Leu ttg/ctg 286 286 phylo (4,2,2,1) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
764995 764995 SNP 1 c g CDS Rv0668 rpoC 763370 767320 3951 + Ala 542 - Ala Ala542Ala gcc/gcg 1626 1626 phylo (4,3) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
615614 615614 SNP 1 c a CDS Rv0524 hemL 614835 616223 1389 + Ala 260 - Ala Ala260Ala gcc/gca 780 780 phylo (4,3,1) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
4316114 4316114 SNP 1 c t CDS Rv3843c - 4316596 4315568 1029 - Ala 161 - Ala Ala161Ala gcc/gct 483 483 phylo (4,3,2) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
1472337 1472337 SNP 1 c t RNA Rvnr01 rrs 1471846 1473382 1537 + - - - - - - 492 492 phylo (4,3,2) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
3388166 3388166 SNP 1 g c CDS Rv3029c fixA 3388870 3388070 801 - Thr 235 - Thr Thr235Thr acg/acc 705 705 phylo (4,3,2,1) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
5520 5520 SNP 1 c t CDS Rv0005 gyrB 5240 7267 2028 + Pro 94 - Leu Pro94Leu ccg/ctg 281 281 phylo (4,3,2,1) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
7222 7222 SNP 1 c t CDS Rv0005 gyrB 5240 7267 2028 + Ser 661 - Ser Ser661Ser agc/agt 1983 1983 phylo (4,3,2,1) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
403364 403364 SNP 1 c t CDS Rv0338c - 405841 403193 2649 - Pro 826 - Pro Pro826Pro ccc/cct 2478 2478 phylo (4,3,3) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
8040 8040 SNP 1 g a CDS Rv0006 gyrA 7302 9818 2517 + Gly 247 - Ser Gly247Ser ggc/agc 739 739 phylo (4,3,3) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2518919 2518919 SNP 1 g a CDS Rv2245 kasA 2518115 2519365 1251 + Gly 269 - Ser Gly269Ser ggt/agt 805 805 phylo (4,3,3) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
3977226 3977226 SNP 1 g a CDS Rv3538 - 3977062 3977922 861 + Leu 55 - Leu Leu55Leu ttg/tta 165 165 phylo (4,3,4) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
4398141 4398141 SNP 1 g a CDS Rv3910 - 4396597 4400151 3555 + Ser 515 - Ser Ser515Ser tcg/tca 1545 1545 phylo (4,3,4,1) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
1132368 1132368 SNP 1 c t CDS Rv1013 pks16 1131625 1133259 1635 + Thr 248 - Thr Thr248Thr acc/act 744 744 phylo (4,3,4,2) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
3514512 3514512 SNP 1 g c CDS Rv3148 nuoD 3513338 3514660 1323 + Gly 392 - Ala Gly392Ala ggt/gct 1175 1175 phylo (4,3,4,2) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
1502120 1502120 SNP 1 c a CDS Rv1333 - 1501599 1502633 1035 + Thr 174 - Thr Thr174Thr acc/aca 522 522 phylo (4,3,4,2,1) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
4307886 4307886 SNP 1 c t CDS Rv3834c serS 4308914 4307655 1260 - Arg 343 - Arg Arg343Arg cgc/cgt 1029 1029 phylo (4,4) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
4238963 4238963 SNP 1 c t CDS Rv3792 aftA 4237932 4239863 1932 + His 344 - His His344His cac/cat 1032 1032 phylo (4,4) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2102990 2102990 SNP 1 t c CDS Rv1854c ndh 2103042 2101651 1392 - Val 18 - Ala Val18Ala gtg/gcg 53 53 phylo (4,4,1) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
4151558 4151558 SNP 1 c t CDS Rv3708c asd 4152217 4151180 1038 - Gly 220 - Gly Gly220Gly ggc/ggt 660 660 phylo (4,4,1) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
355181 355181 SNP 1 g a CDS Rv0291 mycP3 354498 355883 1386 + Lys 228 - Lys Lys228Lys aag/aaa 684 684 phylo (4,4,1,1) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2694560 2694560 SNP 1 c g CDS Rv2397c cysA1 2694964 2693909 1056 - Leu 135 - Leu Leu135Leu ctc/ctg 405 405 phylo (4,4,1,2) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
4249012 4249012 SNP 1 g a CDS Rv3795 embB 4246514 4249810 3297 + Leu 833 - Leu Leu833Leu ctg/cta 2499 2499 phylo (4,4,1,2) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
4268928 4268928 SNP 1 c t CDS Rv3806c ubiA 4269833 4268925 909 - Gly 302 - Gly Gly302Gly ggc/ggt 906 906 phylo (4,4,2) "WHO2018;Yadon et al 10.1038/s41467-017-00721-2" - -
4269375 4269375 SNP 1 g a CDS Rv3806c ubiA 4269833 4268925 909 - Val 153 - Val Val153Val gtg/gta 459 459 phylo (4,4,2) "WHO2018;Yadon et al 10.1038/s41467-017-00721-2" - -
4246508 4246508 SNP 1 g a CDS Rv3794 embA 4243233 4246517 3285 + Ala 1092 - Ala Ala1092Ala gcg/gca 3276 3276 phylo (4,4,2) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
7892 7892 SNP 1 g a CDS Rv0006 gyrA 7302 9818 2517 + Leu 197 - Leu Leu197Leu ctg/cta 591 591 phylo (4,5) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
1719757 1719757 SNP 1 g t CDS Rv1524 - 1718726 1719970 1245 + Pro 344 - Pro Pro344Pro ccg/cct 1032 1032 phylo (4,5) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
3466426 3466426 SNP 1 c t CDS Rv3097c lipY 3467091 3465778 1314 - Val 222 - Val Val222Val gtc/gtt 666 666 phylo (4,6) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
4260268 4260268 SNP 1 c g CDS Rv3800c pks13 4261146 4255945 5202 - Ala 293 - Ala Ala293Ala gcc/gcg 879 879 phylo (4,6,1) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
874787 874787 SNP 1 g a CDS Rv0782 ptrBb 874732 876390 1659 + Arg 19 - Gln Arg19Gln cgg/cag 56 56 phylo (4,6,1,1) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
1416410 1416410 SNP 1 t g CDS Rv1267c embR 1417347 1416181 1167 - Leu 313 - Arg Leu313Arg ctg/cgg 938 938 phylo (4,6,1,2) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
1501468 1501468 SNP 1 g c CDS Rv1332 - 1500926 1501582 657 + Pro 181 - Pro Pro181Pro ccg/ccc 543 543 phylo (4,6,1,2) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
4245055 4245055 SNP 1 c a CDS Rv3794 embA 4243233 4246517 3285 + Thr 608 - Asn Thr608Asn acc/aac 1823 1823 phylo (4,6,1,2) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
4125058 4125058 SNP 1 g c CDS Rv3683 - 4124417 4125376 960 + Arg 214 - Arg Arg214Arg cgg/cgc 642 642 phylo (4,6,2) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
1416702 1416702 SNP 1 t c CDS Rv1267c embR 1417347 1416181 1167 - Tyr 216 - His Tyr216His tac/cac 646 646 phylo (4,6,2,1) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
3570528 3570528 SNP 1 g c CDS Rv3198c uvrD2 3571211 3569109 2103 - Arg 228 - Arg Arg228Arg cgg/cgc 684 684 phylo (4,6,2,1) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
4242883 4242883 SNP 1 c t CDS Rv3793 embC 4239863 4243147 3285 + Pro 1007 - Pro Pro1007Pro ccc/cct 3021 3021 phylo (4,6,2,1) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2875883 2875883 SNP 1 g a CDS Rv2555c alaS 2876485 2873771 2715 - Leu 201 - Leu Leu201Leu ctg/cta 603 603 phylo (4,6,2,2) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
4326739 4326739 SNP 1 c g CDS Rv3854c ethA 4327473 4326004 1470 - Arg 245 - Arg Arg245Arg cgc/cgg 735 735 phylo (4,6,2,2) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
4328004 4328004 SNP 1 g a CDS Rv3855 ethR 4327549 4328199 651 + Val 152 - Val Val152Val gtg/gta 456 456 phylo (4,6,2,2) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
4249732 4249732 SNP 1 c g CDS Rv3795 embB 4246514 4249810 3297 + Ala 1073 - Ala Ala1073Ala gcc/gcg 3219 3219 phylo (4,7) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
3836739 3836739 SNP 1 c t CDS Rv3417c groEL1 3836891 3835272 1620 - Asp 51 - Asp Asp51Asp gac/gat 153 153 phylo (4,8) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2101921 2101921 SNP 1 g a CDS Rv1854c ndh 2103042 2101651 1392 - Ser 374 - Ser Ser374Ser tcg/tca 1122 1122 phylo (5) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
9566 9566 SNP 1 c t CDS Rv0006 gyrA 7302 9818 2517 + Tyr 755 - Tyr Tyr755Tyr tac/tat 2265 2265 phylo (5) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
1799921 1799921 SNP 1 c a CDS Rv1599 hisD 1799583 1800899 1317 + Gly 113 - Gly Gly113Gly ggc/gga 339 339 phylo (5) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
4239843 4239843 SNP 1 a c CDS Rv3792 aftA 4237932 4239863 1932 + Lys 638 - Gln Lys638Gln aag/cag 1912 1912 phylo (5) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
1816587 1816587 SNP 1 c g CDS Rv1617 pykA 1816189 1817607 1419 + Val 133 - Val Val133Val gtc/gtg 399 399 phylo (6) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
1137518 1137518 SNP 1 c t CDS Rv1018c glmU 1138060 1136573 1488 - Asn 181 - Asn Asn181Asn aac/aat 543 543 phylo (7) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
1416977 1416977 SNP 1 a g CDS Rv1267c embR 1417347 1416181 1167 - His 124 - Arg His124Arg cac/cgc 371 371 phylo (7) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2102218 2102218 SNP 1 c t CDS Rv1854c ndh 2103042 2101651 1392 - Val 275 - Val Val275Val gtc/gtt 825 825 phylo (7) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
8876 8876 SNP 1 c t CDS Rv0006 gyrA 7302 9818 2517 + Tyr 525 - Tyr Tyr525Tyr tac/tat 1575 1575 phylo (7) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
764013 764013 SNP 1 a c CDS Rv0668 rpoC 763370 767320 3951 + Glu 215 - Ala Glu215Ala gag/gcg 644 644 phylo (7) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
766955 766955 SNP 1 g a CDS Rv0668 rpoC 763370 767320 3951 + Glu 1196 - Lys Glu1196Lys gag/aag 3586 3586 phylo (7) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
1834916 1834916 SNP 1 a c CDS Rv1630 rpsA 1833542 1834987 1446 + Thr 459 - Pro Thr459Pro acc/ccc 1375 1375 phylo (7) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
1918281 1918281 SNP 1 a c CDS Rv1694 tlyA 1917940 1918746 807 + Gly 114 - Gly Gly114Gly gga/ggc 342 342 phylo (7) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
4238778 4238778 SNP 1 g a CDS Rv3792 aftA 4237932 4239863 1932 + Val 283 - Met Val283Met gtg/atg 847 847 phylo (7) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
4240153 4240153 SNP 1 g a CDS Rv3793 embC 4239863 4243147 3285 + Ser 97 - Ser Ser97Ser tcg/tca 291 291 phylo (7) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
4248073 4248073 SNP 1 c t CDS Rv3795 embB 4246514 4249810 3297 + Thr 520 - Thr Thr520Thr acc/act 1560 1560 phylo (7) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2752122 2752122 SNP 1 c g CDS Rv2450c rpfE 2752180 2751662 519 - Thr 20 - Arg Thr20Arg acg/agg 59 59 phylo (Beijing) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
575907 575907 SNP 1 c t CDS Rv0486 mshA 575348 576790 1443 + Ala 187 - Val Ala187Val gca/gta 560 560 phylo (Beijing) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2955957 2955957 SNP 1 a c CDS Rv2629 - 2955767 2956891 1125 + Asp 64 - Ala Asp64Ala gat/gct 191 191 phylo (Beijing) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
1834177 1834177 SNP 1 a c CDS Rv1630 rpsA 1833542 1834987 1446 + Arg 212 - Arg Arg212Arg cga/cgc 636 636 phylo (Beijing, 2) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
4407927 4407927 SNP 1 a c CDS Rv3919c gidB 4408202 4407528 675 - Glu 92 - Asp Glu92Asp gaa/gac 276 276 phylo (Beijing, 2,2) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
4243460 4243460 SNP 1 c t CDS Rv3794 embA 4243233 4246517 3285 + Cys 76 - Cys Cys76Cys tgc/tgt 228 228 phylo (Beijing, 2,2) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2831482 2831482 SNP 1 t c CDS Rv2515c - 2832591 2831344 1248 - Gly 370 - Gly Gly370Gly ggt/ggc 1110 1110 phylo (BOV) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2155503 2155503 SNP 1 c t CDS Rv1908c katG 2156111 2153889 2223 - Thr 203 - Thr Thr203Thr acc/act 609 609 phylo (BOV_AFRI) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
4269351 4269351 SNP 1 c t CDS Rv3806c ubiA 4269833 4268925 909 - Ala 161 - Ala Ala161Ala gcc/gct 483 483 phylo (BOV_AFRI) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
1882180 1882180 SNP 1 c t CDS Rv1662 pks8 1881704 1886512 4809 + Ala 159 - Ala Ala159Ala gcc/gct 477 477 phylo (BOV_AFRI) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
4246864 4246864 SNP 1 c t CDS Rv3795 embB 4246514 4249810 3297 + Val 117 - Val Val117Val gtc/gtt 351 351 phylo (BOV_AFRI) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
649067 649067 SNP 1 c g CDS Rv0557 mgtA 648536 649672 1137 + Arg 178 - Gly Arg178Gly cgg/ggg 532 532 phylo (Cameroon) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
157129 157129 SNP 1 g a CDS Rv0129c fbpC 157600 156578 1023 - Gly 158 - Ser Gly158Ser ggc/agc 472 472 phylo (Delhi/CAS) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2289047 2289047 SNP 1 c t CDS Rv2043c pncA 2289241 2288681 561 - Ser 65 - Ser Ser65Ser tcc/tct 195 195 phylo (Delhi/CAS) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2941179 2941179 SNP 1 c t CDS Rv2613c - 2941196 2940609 588 - Arg 6 - Arg Arg6Arg cgc/cgt 18 18 phylo (Delhi/CAS) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2726105 2726105 SNP 1 g a PROM Rv2428 ahpC 2726193 2726780 588 + - - - - - - -88 -88 phylo (Delhi/CAS, 3) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
4242075 4242075 SNP 1 g a CDS Rv3793 embC 4239863 4243147 3285 + Arg 738 - Gln Arg738Gln cgg/cag 2213 2213 phylo (Delhi/CAS, 3) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
1128814 1128814 SNP 1 g a CDS Rv1009 rpfB 1128091 1129179 1089 + Glu 242 - Lys Glu242Lys gag/aag 724 724 phylo (EAI Manila) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
495473 495473 SNP 1 g a CDS Rv0410c pknG 497314 495062 2253 - Ser 614 - Ser Ser614Ser tcg/tca 1842 1842 phylo (EAI) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2940608 2940608 SNP 1 g a CDS Rv2612c pgsA1 2940612 2939959 654 - Ser 2 - Asn Ser2Asn agc/aac 5 5 phylo (EAI) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
649345 649345 SNP 1 c t CDS Rv0557 mgtA 648536 649672 1137 + Ala 270 - Ala Ala270Ala gcc/gct 810 810 phylo (EAI) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
4407873 4407873 SNP 1 g t CDS Rv3919c gidB 4408202 4407528 675 - Val 110 - Val Val110Val gtg/gtt 330 330 phylo (EAI, 1) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2956731 2956731 SNP 1 c t CDS Rv2629 - 2955767 2956891 1125 + Pro 322 - Leu Pro322Leu ccg/ctg 965 965 phylo (Ghana) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
4242803 4242803 SNP 1 g c CDS Rv3793 embC 4239863 4243147 3285 + Val 981 - Leu Val981Leu gtg/ctg 2941 2941 phylo (Ghana, Haarlem, X-Type, 4,1) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
491591 491591 SNP 1 a t CDS Rv0407 fgd1 490783 491793 1011 + Lys 270 - Met Lys270Met aag/atg 809 809 phylo (Haarlem) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
575679 575679 SNP 1 a g CDS Rv0486 mshA 575348 576790 1443 + Asn 111 - Ser Asn111Ser aac/agc 332 332 phylo (Haarlem) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
648990 648990 SNP 1 g c CDS Rv0557 mgtA 648536 649672 1137 + Arg 152 - Pro Arg152Pro cgc/ccc 455 455 phylo (Haarlem) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2053987 2053987 SNP 1 g a CDS Rv1811 mgtC 2053443 2054147 705 + Arg 182 - His Arg182His cgc/cac 545 545 phylo (Haarlem) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
157292 157292 SNP 1 g a CDS Rv0129c fbpC 157600 156578 1023 - Glu 103 - Glu Glu103Glu gag/gaa 309 309 phylo (LAM) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
3073868 3073868 SNP 1 a g CDS Rv2764c thyA 3074471 3073680 792 - Thr 202 - Ala Thr202Ala acc/gcc 604 604 phylo (LAM) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2053682 2053682 SNP 1 c t CDS Rv1811 mgtC 2053443 2054147 705 + Ile 80 - Ile Ile80Ile atc/att 240 240 phylo (LAM) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
4408156 4408156 SNP 1 t g CDS Rv3919c gidB 4408202 4407528 675 - Leu 16 - Arg Leu16Arg ctt/cgt 47 47 phylo (LAM, 4,3) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
4407588 4407588 SNP 1 a g CDS Rv3919c gidB 4408202 4407528 675 - Ala 205 - Ala Ala205Ala gca/gcg 615 615 phylo (M. africanum, M. bovis, M. canettii, M. caprae, M. Microti, M. pinipedii, Beijing, Delhi/CAS, EAI, 4) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
4247646 4247646 SNP 1 a c CDS Rv3795 embB 4246514 4249810 3297 + Glu 378 - Ala Glu378Ala gag/gcg 1133 1133 phylo (M. africanum, M. bovis, M. canettii, M. caprae, M. Microti, M. pinipedii, EAI) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
4240671 4240671 SNP 1 c t CDS Rv3793 embC 4239863 4243147 3285 + Thr 270 - Ile Thr270Ile acc/atc 809 809 phylo (M. africanum, M. bovis, M. canettii, M.caprae, M. Microti, M. pinipedii, EAI) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
1816848 1816848 SNP 1 g t CDS Rv1617 pykA 1816189 1817607 1419 + Glu 220 - Asp Glu220Asp gag/gat 660 660 phylo (M. africanum, M. caprae, M. microti, M. pinipedii) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2289073 2289073 SNP 1 c g CDS Rv2043c pncA 2289241 2288681 561 - His 57 - Asp His57Asp cac/gac 169 169 phylo (M. bovis) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
1129160 1129160 SNP 1 c t CDS Rv1009 rpfB 1128091 1129179 1089 + Ala 357 - Val Ala357Val gca/gta 1070 1070 phylo (M. bovis) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
497108 497108 SNP 1 g a CDS Rv0410c pknG 497314 495062 2253 - Pro 69 - Pro Pro69Pro ccg/cca 207 207 phylo (M. bovis, M. caprae) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
1128935 1128935 SNP 1 g a CDS Rv1009 rpfB 1128091 1129179 1089 + Gly 282 - Glu Gly282Glu gga/gaa 845 845 phylo (M. bovis, M. caprae) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
1834859 1834859 SNP 1 g a CDS Rv1630 rpsA 1833542 1834987 1446 + Ala 440 - Thr Ala440Thr gcg/acg 1318 1318 phylo (M. bovis, M. caprae) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2280081 2280081 SNP 1 c t CDS Rv2032 acg 2279129 2280124 996 + Pro 318 - Leu Pro318Leu cca/cta 953 953 phylo (M. bovis, M. caprae) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
4242970 4242970 SNP 1 c t CDS Rv3793 embC 4239863 4243147 3285 + Thr 1036 - Thr Thr1036Thr acc/act 3108 3108 phylo (M. bovis, M. caprae) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
156593 156593 SNP 1 t c CDS Rv0129c fbpC 157600 156578 1023 - Ala 336 - Ala Ala336Ala gct/gcc 1008 1008 phylo (M. canettii) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2134258 2134258 SNP 1 c t CDS Rv1884c rpfC 2134261 2133731 531 - His 2 - Tyr His2Tyr cat/tat 4 4 phylo (M. canettii) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2223896 2223896 SNP 1 t c CDS Rv1980c mpt64 2224029 2223343 687 - Met 45 - Thr Met45Thr atg/acg 134 134 phylo (M. canettii) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2289104 2289104 SNP 1 a g CDS Rv2043c pncA 2289241 2288681 561 - Ala 46 - Ala Ala46Ala gca/gcg 138 138 phylo (M. canettii) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2751764 2751764 SNP 1 g a CDS Rv2450c rpfE 2752180 2751662 519 - Gly 139 - Gly Gly139Gly ggg/gga 417 417 phylo (M. canettii) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2751866 2751866 SNP 1 g a CDS Rv2450c rpfE 2752180 2751662 519 - Ala 105 - Ala Ala105Ala gcg/gca 315 315 phylo (M. canettii) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2936944 2936944 SNP 1 c g CDS Rv2609c - 2937865 2936810 1056 - Gln 308 - Glu Gln308Glu cag/gag 922 922 phylo (M. canettii) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2939577 2939577 SNP 1 t g CDS Rv2611c - 2939962 2939012 951 - Leu 129 - Arg Leu129Arg ctc/cgc 386 386 phylo (M. canettii) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2939716 2939716 SNP 1 t c CDS Rv2611c - 2939962 2939012 951 - Cys 83 - Arg Cys83Arg tgc/cgc 247 247 phylo (M. canettii) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2940461 2940461 SNP 1 t c CDS Rv2612c pgsA1 2940612 2939959 654 - Met 51 - Thr Met51Thr atg/acg 152 152 phylo (M. canettii) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2940562 2940562 SNP 1 c t CDS Rv2612c pgsA1 2940612 2939959 654 - Thr 17 - Thr Thr17Thr acc/act 51 51 phylo (M. canettii) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2940930 2940930 SNP 1 c t CDS Rv2613c - 2941196 2940609 588 - Pro 89 - Pro Pro89Pro ccc/cct 267 267 phylo (M. canettii) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
4408185 4408185 SNP 1 c t CDS Rv3919c gidB 4408202 4407528 675 - Pro 6 - Pro Pro6Pro ccc/cct 18 18 phylo (M. canettii) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
575665 575665 SNP 1 g c CDS Rv0486 mshA 575348 576790 1443 + Gly 106 - Gly Gly106Gly ggg/ggc 318 318 phylo (M. canettii) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
649601 649601 SNP 1 c t CDS Rv0557 mgtA 648536 649672 1137 + Pro 356 - Ser Pro356Ser ccg/tcg 1066 1066 phylo (M. canettii) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
1128915 1128915 SNP 1 g c CDS Rv1009 rpfB 1128091 1129179 1089 + Glu 275 - Asp Glu275Asp gag/gac 825 825 phylo (M. canettii) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
1129124 1129124 SNP 1 t a CDS Rv1009 rpfB 1128091 1129179 1089 + Leu 345 - Gln Leu345Gln ctg/cag 1034 1034 phylo (M. canettii) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
1129128 1129128 SNP 1 t c CDS Rv1009 rpfB 1128091 1129179 1089 + Arg 346 - Arg Arg346Arg cgt/cgc 1038 1038 phylo (M. canettii) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
1674816 1674816 SNP 1 t c CDS Rv1484 inhA 1674202 1675011 810 + Gly 205 - Gly Gly205Gly ggt/ggc 615 615 phylo (M. canettii) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
1833554 1833554 SNP 1 a g CDS Rv1630 rpsA 1833542 1834987 1446 + Thr 5 - Ala Thr5Ala acc/gcc 13 13 phylo (M. canettii) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
1833568 1833568 SNP 1 g c CDS Rv1630 rpsA 1833542 1834987 1446 + Pro 9 - Pro Pro9Pro ccg/ccc 27 27 phylo (M. canettii) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
1834169 1834169 SNP 1 a g CDS Rv1630 rpsA 1833542 1834987 1446 + Thr 210 - Ala Thr210Ala acc/gcc 628 628 phylo (M. canettii) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
1834912 1834912 SNP 1 a g CDS Rv1630 rpsA 1833542 1834987 1446 + Glu 457 - Glu Glu457Glu gaa/gag 1371 1371 phylo (M. canettii) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2053487 2053487 SNP 1 c t CDS Rv1811 mgtC 2053443 2054147 705 + Val 15 - Val Val15Val gtc/gtt 45 45 phylo (M. canettii) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2279314 2279314 SNP 1 g c CDS Rv2032 acg 2279129 2280124 996 + Gly 62 - Gly Gly62Gly ggg/ggc 186 186 phylo (M. canettii) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2955135 2955135 SNP 1 a c CDS Rv2628 - 2955058 2955420 363 + Ile 26 - Ile Ile26Ile ata/atc 78 78 phylo (M. canettii) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2955202 2955202 SNP 1 t g CDS Rv2628 - 2955058 2955420 363 + Ser 49 - Ala Ser49Ala tcc/gcc 145 145 phylo (M. canettii) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2955310 2955310 SNP 1 a g CDS Rv2628 - 2955058 2955420 363 + Thr 85 - Ala Thr85Ala acc/gcc 253 253 phylo (M. canettii) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
3987050 3987050 SNP 1 c t CDS Rv3547 ddn 3986844 3987299 456 + Asp 69 - Asp Asp69Asp gac/gat 207 207 phylo (M. canettii) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
3987287 3987287 SNP 1 t c CDS Rv3547 ddn 3986844 3987299 456 + Val 148 - Val Val148Val gtt/gtc 444 444 phylo (M. canettii) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
4243377 4243377 SNP 1 a c CDS Rv3794 embA 4243233 4246517 3285 + Ser 49 - Arg Ser49Arg agc/cgc 145 145 phylo (M. canettii) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
4243690 4243690 SNP 1 t c CDS Rv3794 embA 4243233 4246517 3285 + Met 153 - Thr Met153Thr atg/acg 458 458 phylo (M. canettii) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
4247590 4247590 SNP 1 a g CDS Rv3795 embB 4246514 4249810 3297 + Leu 359 - Leu Leu359Leu cta/ctg 1077 1077 phylo (M. canettii) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
4247815 4247815 SNP 1 c t CDS Rv3795 embB 4246514 4249810 3297 + Ala 434 - Ala Ala434Ala gcc/gct 1302 1302 phylo (M. canettii) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
4248195 4248195 SNP 1 a g CDS Rv3795 embB 4246514 4249810 3297 + Lys 561 - Arg Lys561Arg aag/agg 1682 1682 phylo (M. canettii) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
4248206 4248206 SNP 1 a g CDS Rv3795 embB 4246514 4249810 3297 + Ser 565 - Gly Ser565Gly agc/ggc 1693 1693 phylo (M. canettii) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
4248439 4248439 SNP 1 c t CDS Rv3795 embB 4246514 4249810 3297 + Thr 642 - Thr Thr642Thr acc/act 1926 1926 phylo (M. canettii) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
1471848 - ins 1 t tt RNA Rvnr01 rrs 1471846 1473382 1537 + - - - - - - 4 4 phylo (M. canettii) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
1471851 1471851 SNP 1 t g RNA Rvnr01 rrs 1471846 1473382 1537 + - - - - - - 6 6 phylo (M. canettii) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
649585 649585 SNP 1 g a CDS Rv0557 mgtA 648536 649672 1137 + Val 350 - Val Val350Val gtg/gta 1050 1050 phylo (M. caprae) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2279228 2279228 SNP 1 g t CDS Rv2032 acg 2279129 2280124 996 + Ala 34 - Ser Ala34Ser gcc/tcc 100 100 phylo (M. caprae) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
1473079 1473079 SNP 1 g a RNA Rvnr01 rrs 1471846 1473382 1537 + - - - - - - 1234 1234 phylo (M. microti) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
1128825 1128825 SNP 1 c t CDS Rv1009 rpfB 1128091 1129179 1089 + Gly 245 - Gly Gly245Gly ggc/ggt 735 735 phylo (M. microti, M. pinipedii) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2955305 2955305 SNP 1 t g CDS Rv2628 - 2955058 2955420 363 + Leu 83 - Trp Leu83Trp ttg/tgg 248 248 phylo (M. microti, M. pinipedii) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
3987111 3987111 SNP 1 c g CDS Rv3547 ddn 3986844 3987299 456 + Leu 90 - Val Leu90Val ctc/gtc 268 268 phylo (M. microti, M. pinipedii) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
1674520 1674520 SNP 1 c t CDS Rv1484 inhA 1674202 1675011 810 + Pro 107 - Ser Pro107Ser ccg/tcg 319 319 phylo (M. pinipedii) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
1473094 1473094 SNP 1 t c RNA Rvnr01 rrs 1471846 1473382 1537 + - - - - - - 1249 1249 phylo (M. pinipedii) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2955233 2955233 SNP 1 c t CDS Rv2628 - 2955058 2955420 363 + Ser 59 - Leu Ser59Leu tcg/ttg 176 176 phylo (M.africanum, M. bovis, M. canettii, M. caprae, M. microti, M. pinipedii, EAI) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
931123 931123 SNP 1 t c CDS Rv0835 lpqQ 930953 931597 645 + Tyr 57 - Tyr Tyr57Tyr tat/tac 171 171 phylo (not 4) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
3326554 3326554 SNP 1 a c CDS Rv2971 - 3326101 3326949 849 + Asn 152 - His Asn152His aac/cac 454 454 phylo (not Euro-American, M. africanum, M. bovis, M . canettii, M. caprae, M. Microti, M. pinipedii, Beijing, Delhi/CAS, EAI) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2154724 2154724 SNP 1 g t CDS Rv1908c katG 2156111 2153889 2223 - Arg 463 - Leu Arg463Leu cgg/ctg 1388 1388 phylo (not Euro-American, M. africanum, M. bovis, M . canettii, M. caprae, M. Microti, M. pinipedii, Beijing, Delhi/CAS, EAI, 4) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
3296371 - ins 7 g gccgcggc CDS Rv2947c pks15 3297840 3296350 1491 - Gly 490 - - Gly490fs ggc/gggccgcggc 1470 1470 phylo (not Euro-American, M. africanum, M. bovis, M. canettii, M. caprae, M. microti, M. pinipedii, Beijing, Delhi/CAS, EAI) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
491742 491742 SNP 1 t c CDS Rv0407 fgd1 490783 491793 1011 + Phe 320 - Phe Phe320Phe ttt/ttc 960 960 phylo (not Euro-American, M. africanum, M. bovis, M. canettii, M. caprae, M. microti, M. pinipedii, Beijing, Delhi/CAS, EAI) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
648856 648856 SNP 1 t c CDS Rv0557 mgtA 648536 649672 1137 + Gly 107 - Gly Gly107Gly ggt/ggc 321 321 phylo (not Euro-American, M. africanum, M. bovis, M. canettii, M. caprae, M. microti, M. pinipedii, Beijing, Delhi/CAS, EAI) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
7585 7585 SNP 1 g c CDS Rv0006 gyrA 7302 9818 2517 + Ser 95 - Thr Ser95Thr agc/acc 284 284 phylo (not H37Rv) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
648992 648992 SNP 1 c g CDS Rv0557 mgtA 648536 649672 1137 + Leu 153 - Val Leu153Val ctg/gtg 457 457 phylo (S-type) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
576077 576077 SNP 1 c t CDS Rv0486 mshA 575348 576790 1443 + Leu 244 - Leu Leu244Leu ctg/ttg 730 730 phylo (TUR) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
1129165 1129165 SNP 1 g a CDS Rv1009 rpfB 1128091 1129179 1089 + Ala 359 - Thr Ala359Thr gcg/acg 1075 1075 phylo (TUR) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
7539 7539 SNP 1 a g CDS Rv0006 gyrA 7302 9818 2517 + Thr 80 - Ala Thr80Ala acc/gcc 238 238 phylo (Uganda I+II, 4,6,1) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
4408213 4408213 SNP 1 c t PROM Rv3919c gidB 4408202 4407528 675 - - - - - - - -11 -11 phylo (Ural) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2053454 2053454 SNP 1 g a CDS Rv1811 mgtC 2053443 2054147 705 + Leu 4 - Leu Leu4Leu ctg/cta 12 12 phylo (Ural) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
491595 491595 SNP 1 c t CDS Rv0407 fgd1 490783 491793 1011 + Ala 271 - Ala Ala271Ala gcc/gct 813 813 phylo (West African 1a) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
495322 495322 SNP 1 g a CDS Rv0410c pknG 497314 495062 2253 - Ala 665 - Thr Ala665Thr gcc/acc 1993 1993 phylo (West African 1a, West African 1b) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2223902 2223902 SNP 1 t a CDS Rv1980c mpt64 2224029 2223343 687 - Ile 43 - Asn Ile43Asn att/aat 128 128 phylo (West African 1a, West African 1b) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2752132 2752132 SNP 1 t c CDS Rv2450c rpfE 2752180 2751662 519 - Leu 17 - Leu Leu17Leu ttg/ctg 49 49 phylo (West African 1a, West African 1b) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
648756 648756 SNP 1 c t CDS Rv0557 mgtA 648536 649672 1137 + Thr 74 - Ile Thr74Ile acg/atg 221 221 phylo (West African 1a, West African 1b) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
649446 649446 SNP 1 g a CDS Rv0557 pimB 648536 649672 1137 + Gly 304 - Asp Gly304Asp ggc/gac 911 911 phylo (West African 1a, West African 1b) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
1673338 1673338 SNP 1 g a PROM Rv1483 fabG1 1673440 1674183 744 + - - - - - - -102 -102 phylo (West African 1a, West African 1b) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2955343 2955343 SNP 1 g a CDS Rv2628 - 2955058 2955420 363 + Ala 96 - Thr Ala96Thr gcg/acg 286 286 phylo (West African 1a, West African 1b) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
3986987 3986987 SNP 1 g t CDS Rv3547 ddn 3986844 3987299 456 + Leu 48 - Leu Leu48Leu ctg/ctt 144 144 phylo (West African 1a, West African 1b) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
3987180 3987180 SNP 1 g a CDS Rv3547 ddn 3986844 3987299 456 + Asp 113 - Asn Asp113Asn gac/aac 337 337 phylo (West African 1a, West African 1b) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2053726 2053726 SNP 1 c t CDS Rv1811 mgtC 2053443 2054147 705 + Thr 95 - Met Thr95Met acg/atg 284 284 phylo (West African 1b) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
495108 495108 SNP 1 c a CDS Rv0410c pknG 497314 495062 2253 - Thr 736 - Lys Thr736Lys acg/aag 2207 2207 phylo (West African 2) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2939177 2939177 SNP 1 t c CDS Rv2611c - 2939962 2939012 951 - Tyr 262 - Tyr Tyr262Tyr tat/tac 786 786 phylo (West African 2) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
273265 273265 SNP 1 g t CDS Rv0228 - 273055 274278 1224 + Gly 71 - Cys Gly71Cys ggc/tgc 211 211 phylo (West African 2) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
491668 491668 SNP 1 a g CDS Rv0407 fgd1 490783 491793 1011 + Lys 296 - Glu Lys296Glu aag/gag 886 886 phylo (West African 2) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
1461251 1461251 SNP 1 g t CDS Rv1305 atpE 1461045 1461290 246 + Ala 69 - Ala Ala69Ala gcg/gct 207 207 phylo (West African 2) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2053762 2053762 SNP 1 c t CDS Rv1811 mgtC 2053443 2054147 705 + Ala 107 - Val Ala107Val gcc/gtc 320 320 phylo (West African 2) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
1674434 1674434 SNP 1 t c CDS Rv1484 inhA 1674202 1675011 810 + Val 78 - Ala Val78Ala gtg/gcg 233 233 phylo (West African 2, 6) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2288682 2288682 SNP 1 G C CDS Rv2043c pncA 2289241 2288681 560 - STOP 187 - Ser STOP187Ser tga/tca 559 559 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288682 2288683 SNP 2 TG GA CDS Rv2043c pncA 2289241 2288681 560 - STOP 187 - Glu STOP187Glu tga/gaa 559 560 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288682 2288683 SNP 2 TG AA CDS Rv2043c pncA 2289241 2288681 560 - STOP 187 - Lys STOP187Lys tga/aaa 559 560 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288682 2288683 SNP 2 TG CT CDS Rv2043c pncA 2289241 2288681 560 - STOP 187 - Leu STOP187Leu tga/cta 559 560 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288682 2288683 SNP 2 TG TT CDS Rv2043c pncA 2289241 2288681 560 - STOP 187 - Leu STOP187Leu tga/tta 559 560 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288682 2288683 SNP 2 TG CA CDS Rv2043c pncA 2289241 2288681 560 - STOP 187 - Gln STOP187Gln tga/caa 559 560 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288710 2288710 SNP 1 G T CDS Rv2043c pncA 2289241 2288681 560 - Ala 178 - Ser Ala178Ser gcc/tcc 531 531 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288710 2288710 SNP 1 G C CDS Rv2043c pncA 2289241 2288681 560 - Ala 178 - Pro Ala178Pro gcc/ccc 531 531 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288710 2288710 SNP 1 G A CDS Rv2043c pncA 2289241 2288681 560 - Ala 178 - Thr Ala178Thr gcc/acc 531 531 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288731 2288731 SNP 1 G C CDS Rv2043c pncA 2289241 2288681 560 - Ala 171 - Pro Ala171Pro gcg/ccg 510 510 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288731 2288731 SNP 1 G T CDS Rv2043c pncA 2289241 2288681 560 - Ala 171 - Ser Ala171Ser gcg/tcg 510 510 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288731 2288731 SNP 1 G A CDS Rv2043c pncA 2289241 2288681 560 - Ala 171 - Thr Ala171Thr gcg/acg 510 510 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2288734 2288734 SNP 1 G C CDS Rv2043c pncA 2289241 2288681 560 - Ala 170 - Pro Ala170Pro gcc/ccc 507 507 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288734 2288734 SNP 1 G T CDS Rv2043c pncA 2289241 2288681 560 - Ala 170 - Ser Ala170Ser gcc/tcc 507 507 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2288734 2288734 SNP 1 G A CDS Rv2043c pncA 2289241 2288681 560 - Ala 170 - Thr Ala170Thr gcc/acc 507 507 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288749 2288749 SNP 1 G C CDS Rv2043c pncA 2289241 2288681 560 - Ala 165 - Pro Ala165Pro gcc/ccc 492 492 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288749 2288749 SNP 1 G T CDS Rv2043c pncA 2289241 2288681 560 - Ala 165 - Ser Ala165Ser gcc/tcc 492 492 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288749 2288749 SNP 1 G A CDS Rv2043c pncA 2289241 2288681 560 - Ala 165 - Thr Ala165Thr gcc/acc 492 492 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288761 2288761 SNP 1 G C CDS Rv2043c pncA 2289241 2288681 560 - Ala 161 - Pro Ala161Pro gcg/ccg 480 480 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2288788 2288788 SNP 1 G A CDS Rv2043c pncA 2289241 2288681 560 - Ala 152 - Thr Ala152Thr gcc/acg 453 453 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288806 2288806 SNP 1 G C CDS Rv2043c pncA 2289241 2288681 560 - Ala 146 - Pro Ala146Pro gcg/ccg 435 435 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288806 2288806 SNP 1 G T CDS Rv2043c pncA 2289241 2288681 560 - Ala 146 - Ser Ala146Ser gcg/tcg 435 435 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2288806 2288806 SNP 1 G A CDS Rv2043c pncA 2289241 2288681 560 - Ala 146 - Thr Ala146Thr gcg/acg 435 435 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2288815 2288815 SNP 1 G C CDS Rv2043c pncA 2289241 2288681 560 - Ala 143 - Pro Ala143Pro gcc/ccc 426 426 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288815 2288815 SNP 1 G T CDS Rv2043c pncA 2289241 2288681 560 - Ala 143 - Ser Ala143Ser gcc/tcc 426 426 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288815 2288815 SNP 1 G A CDS Rv2043c pncA 2289241 2288681 560 - Ala 143 - Thr Ala143Thr gcc/acc 426 426 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288842 2288842 SNP 1 G C CDS Rv2043c pncA 2289241 2288681 560 - Ala 134 - Pro Ala134Pro gcc/ccc 399 399 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2288842 2288842 SNP 1 G A CDS Rv2043c pncA 2289241 2288681 560 - Ala 134 - Thr Ala134Thr gcc/acc 399 399 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288936 2288936 SNP 1 G C CDS Rv2043c pncA 2289241 2288681 560 - Ala 102 - Pro Ala102Pro gcg/ccg 305 305 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2288936 2288936 SNP 1 G T CDS Rv2043c pncA 2289241 2288681 560 - Ala 102 - Ser Ala102Ser gcg/tcg 305 305 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288938 2288938 SNP 1 G A CDS Rv2043c pncA 2289241 2288681 560 - Ala 102 - Thr Ala102Thr gcg/acg 303 303 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288950 2288950 SNP 1 G C CDS Rv2043c pncA 2289241 2288681 560 - Ala 98 - Pro Ala98Pro gcc/ccc 291 291 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288950 2288950 SNP 1 G T CDS Rv2043c pncA 2289241 2288681 560 - Ala 98 - Ser Ala98Ser gcc/tcc 291 291 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288950 2288950 SNP 1 G A CDS Rv2043c pncA 2289241 2288681 560 - Ala 98 - Thr Ala98Thr gcc/acc 291 291 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288968 2288968 SNP 1 G C CDS Rv2043c pncA 2289241 2288681 560 - Ala 92 - Pro Ala92Pro gcg/ccg 273 273 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288968 2288968 SNP 1 G A CDS Rv2043c pncA 2289241 2288681 560 - Ala 92 - Thr Ala92Thr gcg/acg 273 273 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288977 2288977 SNP 1 G A CDS Rv2043c pncA 2289241 2288681 560 - Ala 89 - Thr Ala89Thr gca/aca 264 264 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2289007 2289007 SNP 1 G C CDS Rv2043c pncA 2289241 2288681 560 - Ala 79 - Pro Ala79Pro gcg/ccg 234 234 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2289007 2289007 SNP 1 G A CDS Rv2043c pncA 2289241 2288681 560 - Ala 79 - Thr Ala79Thr gcg/acg 234 234 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2289106 2289106 SNP 1 G C CDS Rv2043c pncA 2289241 2288681 560 - Ala 46 - Pro Ala46Pro gca/cca 135 135 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2289106 2289106 SNP 1 G A CDS Rv2043c pncA 2289241 2288681 560 - Ala 46 - Thr Ala46Thr gca/aca 135 135 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2289127 2289127 SNP 1 G C CDS Rv2043c pncA 2289241 2288681 560 - Ala 39 - Pro Ala39Pro gcg/ccg 114 114 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2289130 2289130 SNP 1 G C CDS Rv2043c pncA 2289241 2288681 560 - Ala 38 - Pro Ala38Pro gcg/ccg 111 111 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2289130 2289130 SNP 1 G T CDS Rv2043c pncA 2289241 2288681 560 - Ala 38 - Ser Ala38Ser gcg/tcg 111 111 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - only in vitro PZA-R
2289136 2289136 SNP 1 G C CDS Rv2043c pncA 2289241 2288681 560 - Ala 36 - Pro Ala36Pro gcc/ccc 105 105 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2289136 2289136 SNP 1 G T CDS Rv2043c pncA 2289241 2288681 560 - Ala 36 - Ser Ala36Ser gcc/tcc 105 105 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2289136 2289136 SNP 1 G A CDS Rv2043c pncA 2289241 2288681 560 - Ala 36 - Thr Ala36Thr gcc/acc 105 105 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2289154 2289154 SNP 1 G C CDS Rv2043c pncA 2289241 2288681 560 - Ala 30 - Pro Ala30Pro gcc/ccc 87 87 pyrazinamide (PZA) "WHO2018;Yadon et al 10.1038/s41467-017-00721-2" - -
2289154 2289154 SNP 1 G T CDS Rv2043c pncA 2289241 2288681 560 - Ala 30 - Ser Ala30Ser gcc/tcc 87 87 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - only in vitro PZA-R
2289160 2289160 SNP 1 G T CDS Rv2043c pncA 2289241 2288681 560 - Ala 28 - Ser Ala28Ser gcc/tcc 81 81 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2289160 2289160 SNP 1 G A CDS Rv2043c pncA 2289241 2288681 560 - Ala 28 - Thr Ala28Thr gcc/acc 81 81 pyrazinamide (PZA) "WHO2018;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2289166 2289166 SNP 1 G T CDS Rv2043c pncA 2289241 2288681 560 - Ala 26 - Ser Ala26Ser gcg/tcg 75 75 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2289169 2289169 SNP 1 G C CDS Rv2043c pncA 2289241 2288681 560 - Ala 25 - Pro Ala25Pro gcc/ccc 72 72 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2289169 2289169 SNP 1 G T CDS Rv2043c pncA 2289241 2288681 560 - Ala 25 - Ser Ala25Ser gcc/tcc 72 72 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2289184 2289184 SNP 1 G C CDS Rv2043c pncA 2289241 2288681 560 - Ala 20 - Pro Ala20Pro gcg/ccg 57 57 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2289235 2289235 SNP 1 G C CDS Rv2043c pncA 2289241 2288681 560 - Ala 3 - Pro Ala3Pro gcg/ccg 6 6 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2289235 2289235 SNP 1 G A CDS Rv2043c pncA 2289241 2288681 560 - Ala 3 - Thr Ala3Thr gcg/acg 6 6 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288709 2288709 SNP 1 C G CDS Rv2043c pncA 2289241 2288681 560 - Ala 178 - Gly Ala178Gly gcc/ggg 532 532 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288730 2288730 SNP 1 C A CDS Rv2043c pncA 2289241 2288681 560 - Ala 171 - Glu Ala171Glu gcg/gag 511 511 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2288730 2288730 SNP 1 C G CDS Rv2043c pncA 2289241 2288681 560 - Ala 171 - Gly Ala171Gly gcg/ggg 511 511 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288733 2288733 SNP 1 C A CDS Rv2043c pncA 2289241 2288681 560 - Ala 170 - Asp Ala170Asp gcc/gac 508 508 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288733 2288733 SNP 1 C G CDS Rv2043c pncA 2289241 2288681 560 - Ala 170 - Gly Ala170Gly gcc/ggc 508 508 pyrazinamide (PZA) "WHO2018;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288733 2288733 SNP 1 C T CDS Rv2043c pncA 2289241 2288681 560 - Ala 170 - Val Ala170Val gcc/gtc 508 508 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2288748 2288748 SNP 1 C A CDS Rv2043c pncA 2289241 2288681 560 - Ala 165 - Asp Ala165Asp gcc/gac 493 493 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2288748 2288748 SNP 1 C G CDS Rv2043c pncA 2289241 2288681 560 - Ala 165 - Gly Ala165Gly gcc/ggc 493 493 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288748 2288748 SNP 1 C T CDS Rv2043c pncA 2289241 2288681 560 - Ala 165 - Val Ala165Val gcc/gtc 493 493 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288760 2288760 SNP 1 C G CDS Rv2043c pncA 2289241 2288681 560 - Ala 161 - Gly Ala161Gly gcg/ggg 481 481 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288760 2288760 SNP 1 C T CDS Rv2043c pncA 2289241 2288681 560 - Ala 161 - Val Ala161Val gcg/gtc 481 481 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288787 2288787 SNP 1 C T CDS Rv2043c pncA 2289241 2288681 560 - Ala 152 - Val Ala152Val gcc/gtc 454 454 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2288787 2288787 SNP 1 C A CDS Rv2043c pncA 2289241 2288681 560 - Ala 152 - Asp Ala152Asp gcc/gac 454 454 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288787 2288787 SNP 1 C G CDS Rv2043c pncA 2289241 2288681 560 - Ala 152 - Gly Ala152Gly gcc/ggc 454 454 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288805 2288805 SNP 1 C A CDS Rv2043c pncA 2289241 2288681 560 - Ala 146 - Glu Ala146Glu gcg/gag 436 436 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2288805 2288805 SNP 1 C G CDS Rv2043c pncA 2289241 2288681 560 - Ala 146 - Gly Ala146Gly gcg/ggg 436 436 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288805 2288805 SNP 1 C T CDS Rv2043c pncA 2289241 2288681 560 - Ala 146 - Val Ala146Val gcg/gtg 436 436 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2288814 2288814 SNP 1 C A CDS Rv2043c pncA 2289241 2288681 560 - Ala 143 - Asp Ala143Asp gcc/gac 427 427 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2288814 2288814 SNP 1 C G CDS Rv2043c pncA 2289241 2288681 560 - Ala 143 - Gly Ala143Gly gcc/ggc 427 427 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288814 2288814 SNP 1 C T CDS Rv2043c pncA 2289241 2288681 560 - Ala 143 - Val Ala143Val gcc/gtc 427 427 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288841 2288841 SNP 1 C A CDS Rv2043c pncA 2289241 2288681 560 - Ala 134 - Asp Ala134Asp gcc/gac 400 400 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288841 2288841 SNP 1 C G CDS Rv2043c pncA 2289241 2288681 560 - Ala 134 - Gly Ala134Gly gcc/ggc 400 400 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288841 2288841 SNP 1 C T CDS Rv2043c pncA 2289241 2288681 560 - Ala 134 - Val Ala134Val gcc/gtc 400 400 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2288937 2288937 SNP 1 C A CDS Rv2043c pncA 2289241 2288681 560 - Ala 102 - Glu Ala102Glu gcg/gag 304 304 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288937 2288937 SNP 1 C G CDS Rv2043c pncA 2289241 2288681 560 - Ala 102 - Gly Ala102Gly gcg/ggg 304 304 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288949 2288949 SNP 1 C G CDS Rv2043c pncA 2289241 2288681 560 - Ala 98 - Gly Ala98Gly gcc/ggc 292 292 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288949 2288949 SNP 1 C T CDS Rv2043c pncA 2289241 2288681 560 - Ala 98 - Val Ala98Val gcc/gtc 292 292 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288967 2288967 SNP 1 C A CDS Rv2043c pncA 2289241 2288681 560 - Ala 92 - Glu Ala92Glu gcg/gag 274 274 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2288967 2288967 SNP 1 C G CDS Rv2043c pncA 2289241 2288681 560 - Ala 92 - Gly Ala92Gly gcg/ggg 274 274 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288967 2288967 SNP 1 C T CDS Rv2043c pncA 2289241 2288681 560 - Ala 92 - Val Ala92Val gcg/gtg 274 274 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288976 2288976 SNP 1 C A CDS Rv2043c pncA 2289241 2288681 560 - Ala 89 - Glu Ala89Glu gca/gaa 265 265 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288976 2288976 SNP 1 C G CDS Rv2043c pncA 2289241 2288681 560 - Ala 89 - Gly Ala89Gly gca/gga 265 265 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288976 2288976 SNP 1 C T CDS Rv2043c pncA 2289241 2288681 560 - Ala 89 - Val Ala89Val gca/gta 265 265 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2289006 2289006 SNP 1 C A CDS Rv2043c pncA 2289241 2288681 560 - Ala 79 - Glu Ala79Glu gcg/gag 235 235 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2289006 2289006 SNP 1 C G CDS Rv2043c pncA 2289241 2288681 560 - Ala 79 - Gly Ala79Gly gcg/ggg 235 235 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2289006 2289006 SNP 1 C T CDS Rv2043c pncA 2289241 2288681 560 - Ala 79 - Val Ala79Val gcg/gtg 235 235 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2289105 2289105 SNP 1 C T CDS Rv2043c pncA 2289241 2288681 560 - Ala 46 - Val Ala46Val gca/gta 136 136 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2289105 2289105 SNP 1 C A CDS Rv2043c pncA 2289241 2288681 560 - Ala 46 - Glu Ala46Glu gca/gaa 136 136 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2289105 2289105 SNP 1 C G CDS Rv2043c pncA 2289241 2288681 560 - Ala 46 - Gly Ala46Gly gca/gga 136 136 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2289126 2289126 SNP 1 C T CDS Rv2043c pncA 2289241 2288681 560 - Ala 39 - Val Ala39Val gcg/gtg 115 115 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2289129 2289129 SNP 1 C A CDS Rv2043c pncA 2289241 2288681 560 - Ala 38 - Glu Ala38Glu gcg/gag 112 112 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2289129 2289129 SNP 1 C G CDS Rv2043c pncA 2289241 2288681 560 - Ala 38 - Gly Ala38Gly gcg/ggg 112 112 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2289135 2289135 SNP 1 C A CDS Rv2043c pncA 2289241 2288681 560 - Ala 36 - Asp Ala36Asp gcc/gac 106 106 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2289135 2289135 SNP 1 C G CDS Rv2043c pncA 2289241 2288681 560 - Ala 36 - Gly Ala36Gly gcc/ggc 106 106 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2289153 2289153 SNP 1 C G CDS Rv2043c pncA 2289241 2288681 560 - Ala 30 - Gly Ala30Gly gcc/ggc 88 88 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2289153 2289153 SNP 1 C T CDS Rv2043c pncA 2289241 2288681 560 - Ala 30 - Val Ala30Val gcc/gtc 88 88 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2289159 2289159 SNP 1 C A CDS Rv2043c pncA 2289241 2288681 560 - Ala 28 - Asp Ala28Asp gcc/gac 82 82 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2289165 2289165 SNP 1 C A CDS Rv2043c pncA 2289241 2288681 560 - Ala 26 - Glu Ala26Glu gcg/gag 76 76 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2289165 2289165 SNP 1 C G CDS Rv2043c pncA 2289241 2288681 560 - Ala 26 - Gly Ala26Gly gcg/ggg 76 76 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2289165 2289165 SNP 1 C T CDS Rv2043c pncA 2289241 2288681 560 - Ala 26 - Val Ala26Val gcg/gtg 76 76 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2289168 2289168 SNP 1 C A CDS Rv2043c pncA 2289241 2288681 560 - Ala 25 - Asp Ala25Asp gcc/gac 73 73 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2289168 2289168 SNP 1 C G CDS Rv2043c pncA 2289241 2288681 560 - Ala 25 - Gly Ala25Gly gcc/ggc 73 73 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2289183 2289183 SNP 1 C G CDS Rv2043c pncA 2289241 2288681 560 - Ala 20 - Gly Ala20Gly gcg/ggg 58 58 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2289183 2289183 SNP 1 C T CDS Rv2043c pncA 2289241 2288681 560 - Ala 20 - Val Ala20Val gcg/gtg 58 58 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2289234 2289234 SNP 1 C A CDS Rv2043c pncA 2289241 2288681 560 - Ala 3 - Glu Ala3Glu gcg/gag 7 7 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2289234 2289234 SNP 1 C G CDS Rv2043c pncA 2289241 2288681 560 - Ala 3 - Gly Ala3Gly gcg/ggg 7 7 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288692 2288692 SNP 1 T G CDS Rv2043c pncA 2289241 2288681 560 - Cys 184 - Gly Cys184Gly tgc/ggc 549 549 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288692 2288692 SNP 1 T C CDS Rv2043c pncA 2289241 2288681 560 - Cys 184 - Arg Cys184Arg tgc/cgc 549 549 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2288692 2288692 SNP 1 T A CDS Rv2043c pncA 2289241 2288681 560 - Cys 184 - Ser Cys184Ser tgc/agc 549 549 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288828 2288828 SNP 1 T A CDS Rv2043c pncA 2289241 2288681 560 - Cys 138 - STOP Cys138STOP tgt/tga 413 413 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2288828 2288828 SNP 1 T G CDS Rv2043c pncA 2289241 2288681 560 - Cys 138 - Trp Cys138Trp tgt/tgg 413 413 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288830 2288830 SNP 1 T G CDS Rv2043c pncA 2289241 2288681 560 - Cys 138 - Gly Cys138Gly tgt/ggt 411 411 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2288830 2288830 SNP 1 T C CDS Rv2043c pncA 2289241 2288681 560 - Cys 138 - Arg Cys138Arg tgt/cgt 411 411 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2288830 2288830 SNP 1 T A CDS Rv2043c pncA 2289241 2288681 560 - Cys 138 - Ser Cys138Ser tgt/agt 411 411 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2289028 2289028 SNP 1 T G CDS Rv2043c pncA 2289241 2288681 560 - Cys 72 - Gly Cys72Gly tgc/ggc 213 213 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2289028 2289028 SNP 1 T C CDS Rv2043c pncA 2289241 2288681 560 - Cys 72 - Arg Cys72Arg tgc/cgc 213 213 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2289202 2289202 SNP 1 T G CDS Rv2043c pncA 2289241 2288681 560 - Cys 14 - Gly Cys14Gly tgc/ggc 39 39 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2289202 2289202 SNP 1 T C CDS Rv2043c pncA 2289241 2288681 560 - Cys 14 - Arg Cys14Arg tgc/cgc 39 39 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2288691 2288691 SNP 1 G T CDS Rv2043c pncA 2289241 2288681 560 - Cys 184 - Phe Cys184Phe tgc/ttc 550 550 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288829 2288829 SNP 1 G T CDS Rv2043c pncA 2289241 2288681 560 - Cys 138 - Phe Cys138Phe tgt/ttt 412 412 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2288829 2288829 SNP 1 G A CDS Rv2043c pncA 2289241 2288681 560 - Cys 138 - Tyr Cys138Tyr tgt/tat 412 412 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2289027 2289027 SNP 1 G T CDS Rv2043c pncA 2289241 2288681 560 - Cys 72 - Phe Cys72Phe tgc/ttc 214 214 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2289027 2289027 SNP 1 G A CDS Rv2043c pncA 2289241 2288681 560 - Cys 72 - Tyr Cys72Tyr tgc/tac 214 214 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2289201 2289201 SNP 1 G T CDS Rv2043c pncA 2289241 2288681 560 - Cys 14 - Phe Cys14Phe tgc/ttc 40 40 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2289201 2289201 SNP 1 G C CDS Rv2043c pncA 2289241 2288681 560 - Cys 14 - Ser Cys14Ser tgc/tcc 40 40 pyrazinamide (PZA) "WHO2018;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2289201 2289201 SNP 1 G A CDS Rv2043c pncA 2289241 2288681 560 - Cys 14 - Tyr Cys14Tyr tgc/tac 40 40 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2288690 2288690 SNP 1 C A CDS Rv2043c pncA 2289241 2288681 560 - Cys 184 - STOP Cys184STOP tgc/tga 551 551 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288690 2288690 SNP 1 C G CDS Rv2043c pncA 2289241 2288681 560 - Cys 184 - Trp Cys184Trp tgc/rgg 551 551 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2289026 2289026 SNP 1 C A CDS Rv2043c pncA 2289241 2288681 560 - Cys 72 - STOP Cys72STOP tgc/tga 215 215 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2289026 2289026 SNP 1 C G CDS Rv2043c pncA 2289241 2288681 560 - Cys 72 - Trp Cys72Trp tgc/tgg 215 215 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2289200 2289200 SNP 1 C A CDS Rv2043c pncA 2289241 2288681 560 - Cys 14 - STOP Cys14STOP tgc/tga 41 41 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2289200 2289200 SNP 1 C G CDS Rv2043c pncA 2289241 2288681 560 - Cys 14 - Trp Cys14Trp tgc/tgg 41 41 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2288744 2288744 SNP 1 T G CDS Rv2043c pncA 2289241 2288681 560 - Asp 166 - Glu Asp166Glu gat/gag 497 497 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288744 2288744 SNP 1 T A CDS Rv2043c pncA 2289241 2288681 560 - Asp 166 - Glu Asp166Glu gat/gaa 497 497 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288855 2288855 SNP 1 T G CDS Rv2043c pncA 2289241 2288681 560 - Asp 129 - Glu Asp129Glu gat/gag 386 386 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2288855 2288855 SNP 1 T A CDS Rv2043c pncA 2289241 2288681 560 - Asp 129 - Glu Asp129Glu gat/gaa 386 386 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2288864 2288864 SNP 1 T G CDS Rv2043c pncA 2289241 2288681 560 - Asp 126 - Glu Asp126Glu gat/gag 377 377 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288864 2288864 SNP 1 T A CDS Rv2043c pncA 2289241 2288681 560 - Asp 126 - Glu Asp126Glu gat/gaa 377 377 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288145 2288145 SNP 1 G C CDS Rv2043c pncA 2289241 2288681 560 - Asp 33 - His Asp33His gac/cac 1096 1096 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288746 2288746 SNP 1 G A CDS Rv2043c pncA 2289241 2288681 560 - Asp 166 - Asn Asp166Asn gat/aat 495 495 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288746 2288746 SNP 1 G T CDS Rv2043c pncA 2289241 2288681 560 - Asp 166 - Tyr Asp166Tyr gat/tat 495 495 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288770 2288770 SNP 1 G C CDS Rv2043c pncA 2289241 2288681 560 - Asp 158 - His Asp158His gac/cac 471 471 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288770 2288770 SNP 1 G T CDS Rv2043c pncA 2289241 2288681 560 - Asp 158 - Tyr Asp158Tyr gac/tac 471 471 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288809 2288809 SNP 1 G C CDS Rv2043c pncA 2289241 2288681 560 - Asp 145 - His Asp145His gac/cac 432 432 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288809 2288809 SNP 1 G T CDS Rv2043c pncA 2289241 2288681 560 - Asp 145 - Tyr Asp145Tyr gac/tac 432 432 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288836 2288836 SNP 1 G C CDS Rv2043c pncA 2289241 2288681 560 - Asp 136 - His Asp136His gat/cat 405 405 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2288836 2288836 SNP 1 G A CDS Rv2043c pncA 2289241 2288681 560 - Asp 136 - Asn Asp136Asn gat/aat 405 405 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - only in vivo PZA-R
2288836 2288836 SNP 1 G T CDS Rv2043c pncA 2289241 2288681 560 - Asp 136 - Tyr Asp136Tyr gat/tat 405 405 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2288857 2288857 SNP 1 G C CDS Rv2043c pncA 2289241 2288681 560 - Asp 129 - His Asp129His gat/cat 384 384 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288857 2288857 SNP 1 G A CDS Rv2043c pncA 2289241 2288681 560 - Asp 129 - Asn Asp129Asn gat/aat 384 384 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2288914 2288914 SNP 1 G C CDS Rv2043c pncA 2289241 2288681 560 - Asp 110 - His Asp110His gac/cac 327 327 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2288914 2288914 SNP 1 G A CDS Rv2043c pncA 2289241 2288681 560 - Asp 110 - Asn Asp110Asn gac/aac 327 327 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2288986 2288986 SNP 1 G C CDS Rv2043c pncA 2289241 2288681 560 - Asp 86 - His Asp86His gac/cac 255 255 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288986 2288986 SNP 1 G T CDS Rv2043c pncA 2289241 2288681 560 - Asp 86 - Tyr Asp86Tyr gac/tac 255 255 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2289004 2289004 SNP 1 G C CDS Rv2043c pncA 2289241 2288681 560 - Asp 80 - His Asp80His gac/cac 237 237 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2289055 2289055 SNP 1 G C CDS Rv2043c pncA 2289241 2288681 560 - Asp 63 - His Asp63His gac/cac 186 186 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2289055 2289055 SNP 1 G T CDS Rv2043c pncA 2289241 2288681 560 - Asp 63 - Tyr Asp63Tyr gac/tac 186 186 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2289076 2289076 SNP 1 G C CDS Rv2043c pncA 2289241 2288681 560 - Asp 56 - His Asp56His gac/cac 165 165 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2289076 2289076 SNP 1 G T CDS Rv2043c pncA 2289241 2288681 560 - Asp 56 - Tyr Asp56Tyr gac/tac 165 165 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2289085 2289085 SNP 1 G C CDS Rv2043c pncA 2289241 2288681 560 - Asp 53 - His Asp53His gac/cac 156 156 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2289085 2289085 SNP 1 G T CDS Rv2043c pncA 2289241 2288681 560 - Asp 53 - Tyr Asp53Tyr gac/tac 156 156 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2289097 2289097 SNP 1 G T CDS Rv2043c pncA 2289241 2288681 560 - Asp 49 - Tyr Asp49Tyr gac/gat 144 144 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2289097 2289097 SNP 1 G C CDS Rv2043c pncA 2289241 2288681 560 - Asp 49 - His Asp49His gac/cac 144 144 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2289097 2289097 SNP 1 G A CDS Rv2043c pncA 2289241 2288681 560 - Asp 49 - Asn Asp49Asn gac/aac 144 144 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2289124 2289124 SNP 1 G C CDS Rv2043c pncA 2289241 2288681 560 - Asp 40 - His Asp40His gac/cac 117 117 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2289124 2289124 SNP 1 G A CDS Rv2043c pncA 2289241 2288681 560 - Asp 40 - Asn Asp40Asn gac/aac 117 117 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2289124 2289124 SNP 1 G T CDS Rv2043c pncA 2289241 2288681 560 - Asp 40 - Tyr Asp40Tyr gac/tac 117 117 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2289208 2289208 SNP 1 G C CDS Rv2043c pncA 2289241 2288681 560 - Asp 12 - His Asp12His gac/cac 33 33 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2289208 2289208 SNP 1 G A CDS Rv2043c pncA 2289241 2288681 560 - Asp 12 - Asn Asp12Asn gac/aac 33 33 pyrazinamide (PZA) "WALKER;Yadon et al 10.1038/s41467-017-00721-2" - -
2289208 2289208 SNP 1 G T CDS Rv2043c pncA 2289241 2288681 560 - Asp 12 - Tyr Asp12Tyr gac/tac 33 33 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2289220 2289220 SNP 1 G C CDS Rv2043c pncA 2289241 2288681 560 - Asp 8 - His Asp8His gac/cac 21 21 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2289220 2289220 SNP 1 G A CDS Rv2043c pncA 2289241 2288681 560 - Asp 8 - Asn Asp8Asn gac/aac 21 21 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2289220 2289220 SNP 1 G T CDS Rv2043c pncA 2289241 2288681 560 - Asp 8 - Tyr Asp8Tyr gac/tac 21 21 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2288807 2288807 SNP 1 C G CDS Rv2043c pncA 2289241 2288681 560 - Asp 145 - Glu Asp145Glu gac/gag 434 434 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2288807 2288807 SNP 1 C A CDS Rv2043c pncA 2289241 2288681 560 - Asp 145 - Glu Asp145Glu gac/gaa 434 434 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2288912 2288912 SNP 1 C A CDS Rv2043c pncA 2289241 2288681 560 - Asp 110 - Glu Asp110Glu gac/gaa 329 329 pyrazinamide (PZA) "WHO2018;Yadon et al 10.1038/s41467-017-00721-2" - -
2288912 2288912 SNP 1 C G CDS Rv2043c pncA 2289241 2288681 560 - Asp 110 - Glu Asp110Glu gac/gag 329 329 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2289053 2289053 SNP 1 C G CDS Rv2043c pncA 2289241 2288681 560 - Asp 63 - Glu Asp63Glu gac/gag 188 188 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2289053 2289053 SNP 1 C A CDS Rv2043c pncA 2289241 2288681 560 - Asp 63 - Glu Asp63Glu gac/gaa 188 188 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2289083 2289083 SNP 1 C A CDS Rv2043c pncA 2289241 2288681 560 - Asp 53 - Glu Asp53Glu gac/gaa 158 158 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2289083 2289083 SNP 1 C G CDS Rv2043c pncA 2289241 2288681 560 - Asp 53 - Glu Asp53Glu gac/gag 158 158 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2289095 2289095 SNP 1 C G CDS Rv2043c pncA 2289241 2288681 560 - Asp 49 - Glu Asp49Glu gac/gag 146 146 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2289095 2289095 SNP 1 C A CDS Rv2043c pncA 2289241 2288681 560 - Asp 49 - Glu Asp49Glu gac/gaa 146 146 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2289206 2289206 SNP 1 C G CDS Rv2043c pncA 2289241 2288681 560 - Asp 12 - Glu Asp12Glu gac/gag 35 35 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2289206 2289206 SNP 1 C A CDS Rv2043c pncA 2289241 2288681 560 - Asp 12 - Glu Asp12Glu gac/gaa 35 35 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2289218 2289218 SNP 1 C A CDS Rv2043c pncA 2289241 2288681 560 - Asp 8 - Glu Asp8Glu gac/gaa 23 23 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2289218 2289218 SNP 1 C G CDS Rv2043c pncA 2289241 2288681 560 - Asp 8 - Glu Asp8Glu gac/gag 23 23 pyrazinamide (PZA) "WALKER;Yadon et al 10.1038/s41467-017-00721-2" - -
2288745 2288745 SNP 1 A C CDS Rv2043c pncA 2289241 2288681 560 - Asp 166 - Ala Asp166Ala gat/gct 496 496 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288745 2288745 SNP 1 A G CDS Rv2043c pncA 2289241 2288681 560 - Asp 166 - Gly Asp166Gly gat/ggt 496 496 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288745 2288745 SNP 1 A T CDS Rv2043c pncA 2289241 2288681 560 - Asp 166 - Val Asp166Val gat/gtt 496 496 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - only in vitro PZA-R
2288769 2288769 SNP 1 A C CDS Rv2043c pncA 2289241 2288681 560 - Asp 158 - Ala Asp158Ala gac/gcc 472 472 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288769 2288769 SNP 1 A G CDS Rv2043c pncA 2289241 2288681 560 - Asp 158 - Gly Asp158Gly gac/ggc 472 472 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2288769 2288769 SNP 1 A T CDS Rv2043c pncA 2289241 2288681 560 - Asp 158 - Val Asp158Val gac/gtc 472 472 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288808 2288808 SNP 1 A C CDS Rv2043c pncA 2289241 2288681 560 - Asp 145 - Ala Asp145Ala gac/gcc 433 433 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288808 2288808 SNP 1 A T CDS Rv2043c pncA 2289241 2288681 560 - Asp 145 - Val Asp145Val gac/gtc 433 433 pyrazinamide (PZA) "WHO2018;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288835 2288835 SNP 1 A C CDS Rv2043c pncA 2289241 2288681 560 - Asp 136 - Ala Asp136Ala gat/gct 406 406 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288835 2288835 SNP 1 A G CDS Rv2043c pncA 2289241 2288681 560 - Asp 136 - Gly Asp136Gly gat/ggt 406 406 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288835 2288835 SNP 1 A T CDS Rv2043c pncA 2289241 2288681 560 - Asp 136 - Val Asp136Val gat/gtt 406 406 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2288856 2288856 SNP 1 A C CDS Rv2043c pncA 2289241 2288681 560 - Asp 129 - Ala Asp129Ala gat/gct 385 385 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288856 2288856 SNP 1 A G CDS Rv2043c pncA 2289241 2288681 560 - Asp 129 - Gly Asp129Gly gat/ggt 385 385 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288865 2288865 SNP 1 A C CDS Rv2043c pncA 2289241 2288681 560 - Asp 126 - Ala Asp126Ala gat/gct 376 376 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288865 2288865 SNP 1 A G CDS Rv2043c pncA 2289241 2288681 560 - Asp 126 - Gly Asp126Gly gat/ggt 376 376 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288913 2288913 SNP 1 A C CDS Rv2043c pncA 2289241 2288681 560 - Asp 110 - Ala Asp110Ala gac/gcc 328 328 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288985 2288985 SNP 1 A C CDS Rv2043c pncA 2289241 2288681 560 - Asp 86 - Ala Asp86Ala gac/gcc 256 256 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288985 2288985 SNP 1 A T CDS Rv2043c pncA 2289241 2288681 560 - Asp 86 - Val Asp86Val gac/gtc 256 256 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2289003 2289003 SNP 1 A C CDS Rv2043c pncA 2289241 2288681 560 - Asp 80 - Ala Asp80Ala gac/gcc 238 238 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2289054 2289054 SNP 1 A C CDS Rv2043c pncA 2289241 2288681 560 - Asp 63 - Ala Asp63Ala gac/gcc 187 187 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2289054 2289054 SNP 1 A G CDS Rv2043c pncA 2289241 2288681 560 - Asp 63 - Gly Asp63Gly gac/ggc 187 187 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2289054 2289054 SNP 1 A T CDS Rv2043c pncA 2289241 2288681 560 - Asp 63 - Val Asp63Val gac/gtc 187 187 pyrazinamide (PZA) "WHO2018;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2289075 2289075 SNP 1 A G CDS Rv2043c pncA 2289241 2288681 560 - Asp 56 - Gly Asp56Gly gac/ggc 166 166 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2289075 2289075 SNP 1 A T CDS Rv2043c pncA 2289241 2288681 560 - Asp 56 - Val Asp56Val gac/gtc 166 166 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2289084 2289084 SNP 1 A C CDS Rv2043c pncA 2289241 2288681 560 - Asp 53 - Ala Asp53Ala gac/gcc 157 157 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2289084 2289084 SNP 1 A G CDS Rv2043c pncA 2289241 2288681 560 - Asp 53 - Gly Asp53Gly gac/ggc 157 157 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2289084 2289084 SNP 1 A T CDS Rv2043c pncA 2289241 2288681 560 - Asp 53 - Val Asp53Val gac/gtc 157 157 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2289096 2289096 SNP 1 A C CDS Rv2043c pncA 2289241 2288681 560 - Asp 49 - Ala Asp49Ala gac/gcc 145 145 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2289096 2289096 SNP 1 A G CDS Rv2043c pncA 2289241 2288681 560 - Asp 49 - Gly Asp49Gly gac/ggc 145 145 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2289096 2289096 SNP 1 A T CDS Rv2043c pncA 2289241 2288681 560 - Asp 49 - Val Asp49Val gac/gtc 145 145 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2289123 2289123 SNP 1 A C CDS Rv2043c pncA 2289241 2288681 560 - Asp 40 - Ala Asp40Ala gac/gcc 118 118 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2289123 2289123 SNP 1 A G CDS Rv2043c pncA 2289241 2288681 560 - Asp 40 - Gly Asp40Gly gac/ggc 118 118 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2289123 2289123 SNP 1 A T CDS Rv2043c pncA 2289241 2288681 560 - Asp 40 - Val Asp40Val gac/gtc 118 118 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2289144 2289144 SNP 1 A G CDS Rv2043c pncA 2289241 2288681 560 - Asp 33 - Gly Asp33Gly gac/ggc 97 97 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2289207 2289207 SNP 1 A C CDS Rv2043c pncA 2289241 2288681 560 - Asp 12 - Ala Asp12Ala gac/gcc 34 34 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2289207 2289207 SNP 1 A G CDS Rv2043c pncA 2289241 2288681 560 - Asp 12 - Gly Asp12Gly gac/ggc 34 34 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2289207 2289207 SNP 1 A T CDS Rv2043c pncA 2289241 2288681 560 - Asp 12 - Val Asp12Val gac/gtc 34 34 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2289219 2289219 SNP 1 A C CDS Rv2043c pncA 2289241 2288681 560 - Asp 8 - Ala Asp8Ala gac/gcc 22 22 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2289219 2289219 SNP 1 A G CDS Rv2043c pncA 2289241 2288681 560 - Asp 8 - Gly Asp8Gly gac/ggc 22 22 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2289219 2289219 SNP 1 A T CDS Rv2043c pncA 2289241 2288681 560 - Asp 8 - Val Asp8Val gac/gtc 22 22 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2288701 2288701 SNP 1 G T CDS Rv2043c pncA 2289241 2288681 560 - Glu 181 - STOP Glu181STOP gag/tag 540 540 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2288701 2288701 SNP 1 G A CDS Rv2043c pncA 2289241 2288681 560 - Glu 181 - Lys Glu181Lys gag/aag 540 540 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2288701 2288701 SNP 1 G C CDS Rv2043c pncA 2289241 2288681 560 - Glu 181 - Gln Glu181Gln gag/cag 540 540 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288720 2288720 SNP 1 G C CDS Rv2043c pncA 2289241 2288681 560 - Glu 174 - Asp Glu174Asp gag/gac 521 521 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288720 2288720 SNP 1 G T CDS Rv2043c pncA 2289241 2288681 560 - Glu 174 - Asp Glu174Asp gag/gat 521 521 pyrazinamide (PZA) "WHO2018;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288722 2288722 SNP 1 G T CDS Rv2043c pncA 2289241 2288681 560 - Glu 174 - STOP Glu174STOP gag/tag 519 519 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288722 2288722 SNP 1 G A CDS Rv2043c pncA 2289241 2288681 560 - Glu 174 - Lys Glu174Lys gag/aag 519 519 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2288722 2288722 SNP 1 G C CDS Rv2043c pncA 2289241 2288681 560 - Glu 174 - Gln Glu174Gln gag/cag 519 519 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288725 2288725 SNP 1 G T CDS Rv2043c pncA 2289241 2288681 560 - Glu 173 - STOP Glu173STOP gag/tag 516 516 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2288725 2288725 SNP 1 G T CDS Rv2043c pncA 2289241 2288681 560 - Glu 173 - Gln Glu173Gln gag/cag 516 516 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288812 2288812 SNP 1 G T CDS Rv2043c pncA 2289241 2288681 560 - Glu 144 - STOP Glu144STOP gag/tag 429 429 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2288812 2288812 SNP 1 G C CDS Rv2043c pncA 2289241 2288681 560 - Glu 144 - Gln Glu144Gln gag/cag 429 429 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288861 2288861 SNP 1 G T CDS Rv2043c pncA 2289241 2288681 560 - Glu 127 - Asp Glu127Asp gag/gat 380 380 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2288861 2288861 SNP 1 G C CDS Rv2043c pncA 2289241 2288681 560 - Glu 127 - Asp Glu127Asp gag/gac 380 380 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2288863 2288863 SNP 1 G T CDS Rv2043c pncA 2289241 2288681 560 - Glu 127 - STOP Glu127STOP gag/tag 378 378 pyrazinamide (PZA) "WHO2018;Yadon et al 10.1038/s41467-017-00721-2" - -
2288863 2288863 SNP 1 G C CDS Rv2043c pncA 2289241 2288681 560 - Glu 127 - Gln Glu127Gln gag/cag 378 378 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288911 2288911 SNP 1 G T CDS Rv2043c pncA 2289241 2288681 560 - Glu 111 - STOP Glu111STOP gag/tag 330 330 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2288911 2288911 SNP 1 G C CDS Rv2043c pncA 2289241 2288681 560 - Glu 111 - Gln Glu111Gln gag/cag 330 330 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288923 2288923 SNP 1 G A CDS Rv2043c pncA 2289241 2288681 560 - Glu 107 - STOP Glu107STOP gaa/taa 318 318 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288971 2288971 SNP 1 G T CDS Rv2043c pncA 2289241 2288681 560 - Glu 91 - STOP Glu91STOP gag/tag 270 270 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2288971 2288971 SNP 1 G A CDS Rv2043c pncA 2289241 2288681 560 - Glu 91 - Lys Glu91Lys gag/aag 270 270 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288971 2288971 SNP 1 G C CDS Rv2043c pncA 2289241 2288681 560 - Glu 91 - Gln Glu91Gln gag/ggg 270 270 pyrazinamide (PZA) "WHO2018;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2289133 2289133 SNP 1 G T CDS Rv2043c pncA 2289241 2288681 560 - Glu 37 - STOP Glu37STOP gaa/taa 108 108 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2289133 2289133 SNP 1 G A CDS Rv2043c pncA 2289241 2288681 560 - Glu 37 - Lys Glu37Lys gaa/aaa 108 108 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2289133 2289133 SNP 1 G C CDS Rv2043c pncA 2289241 2288681 560 - Glu 37 - Gln Glu37Gln gaa/cag 108 108 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2289199 2289199 SNP 1 G T CDS Rv2043c pncA 2289241 2288681 560 - Glu 15 - STOP Glu15STOP gag/tag 42 42 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2289199 2289199 SNP 1 G C CDS Rv2043c pncA 2289241 2288681 560 - Glu 15 - Gly Glu15Gly gag/cag 42 42 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288700 2288700 SNP 1 A C CDS Rv2043c pncA 2289241 2288681 560 - Glu 181 - Ala Glu181Ala gag/gcg 541 541 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288700 2288700 SNP 1 A G CDS Rv2043c pncA 2289241 2288681 560 - Glu 181 - Gly Glu181Gly gag/ggg 541 541 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288700 2288700 SNP 1 A T CDS Rv2043c pncA 2289241 2288681 560 - Glu 181 - Val Glu181Val gag/gtg 541 541 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288721 2288721 SNP 1 A C CDS Rv2043c pncA 2289241 2288681 560 - Glu 174 - Ala Glu174Ala gag/gcg 520 520 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288721 2288721 SNP 1 A G CDS Rv2043c pncA 2289241 2288681 560 - Glu 174 - Gly Glu174Gly gag/ggg 520 520 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2288724 2288724 SNP 1 A C CDS Rv2043c pncA 2289241 2288681 560 - Glu 173 - Ala Glu173Ala gag/gcg 517 517 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288724 2288724 SNP 1 A G CDS Rv2043c pncA 2289241 2288681 560 - Glu 173 - Gly Glu173Gly gag/ggg 517 517 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2288811 2288811 SNP 1 A C CDS Rv2043c pncA 2289241 2288681 560 - Glu 144 - Ala Glu144Ala gag/gcg 430 430 pyrazinamide (PZA) "WHO2018;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288862 2288862 SNP 1 A C CDS Rv2043c pncA 2289241 2288681 560 - Glu 127 - Ala Glu127Ala gag/gcg 379 379 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288862 2288862 SNP 1 A T CDS Rv2043c pncA 2289241 2288681 560 - Glu 127 - Val Glu127Val gag/gtg 379 379 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288910 2288910 SNP 1 A T CDS Rv2043c pncA 2289241 2288681 560 - Glu 111 - Val Glu111Val gag/gtg 331 331 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288922 2288922 SNP 1 A C CDS Rv2043c pncA 2289241 2288681 560 - Glu 107 - Ala Glu107Ala gaa/gca 319 319 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288922 2288922 SNP 1 A T CDS Rv2043c pncA 2289241 2288681 560 - Glu 107 - Val Glu107Val gaa/gta 319 319 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288970 2288970 SNP 1 A C CDS Rv2043c pncA 2289241 2288681 560 - Glu 91 - Ala Glu91Ala gag/gcg 271 271 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288970 2288970 SNP 1 A G CDS Rv2043c pncA 2289241 2288681 560 - Glu 91 - Gly Glu91Gly gag/ggg 271 271 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288970 2288970 SNP 1 A T CDS Rv2043c pncA 2289241 2288681 560 - Glu 91 - Val Glu91Val gag/gtg 271 271 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2289132 2289132 SNP 1 A C CDS Rv2043c pncA 2289241 2288681 560 - Glu 37 - Ala Glu37Ala gaa/gca 109 109 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2289132 2289132 SNP 1 A G CDS Rv2043c pncA 2289241 2288681 560 - Glu 37 - Gly Glu37Gly gaa/gga 109 109 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2289132 2289132 SNP 1 A T CDS Rv2043c pncA 2289241 2288681 560 - Glu 37 - Val Glu37Val gaa/gta 109 109 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - only in vitro PZA-R
2289198 2289198 SNP 1 A C CDS Rv2043c pncA 2289241 2288681 560 - Glu 15 - Ala Glu15Ala gag/gcg 43 43 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2289198 2289198 SNP 1 A T CDS Rv2043c pncA 2289241 2288681 560 - Glu 15 - Val Glu15Val gag/gtg 43 43 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288925 2288925 SNP 1 T G CDS Rv2043c pncA 2289241 2288681 560 - Phe 106 - Cys Phe106Cys ttc/tgc 316 316 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288925 2288925 SNP 1 T C CDS Rv2043c pncA 2289241 2288681 560 - Phe 106 - Ser Phe106Ser ttc/tcc 316 316 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2288925 2288925 SNP 1 T A CDS Rv2043c pncA 2289241 2288681 560 - Phe 106 - Tyr Phe106Tyr ttc/tac 316 316 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2288926 2288926 SNP 1 T A CDS Rv2043c pncA 2289241 2288681 560 - Phe 106 - Ile Phe106Ile ttc/atc 315 315 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288926 2288926 SNP 1 T G CDS Rv2043c pncA 2289241 2288681 560 - Phe 106 - Val Phe106Val ttc/gtc 315 315 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288961 2288961 SNP 1 T G CDS Rv2043c pncA 2289241 2288681 560 - Phe 94 - Cys Phe94Cys ttc/tgc 280 280 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2288961 2288961 SNP 1 T C CDS Rv2043c pncA 2289241 2288681 560 - Phe 94 - Ser Phe94Ser ttc/tcc 280 280 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2288961 2288961 SNP 1 T A CDS Rv2043c pncA 2289241 2288681 560 - Phe 94 - Tyr Phe94Tyr ttc/tac 280 280 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - only in vivo PZA-R
2288962 2288962 SNP 1 T A CDS Rv2043c pncA 2289241 2288681 560 - Phe 94 - Ile Phe94Ile ttc/atc 279 279 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288962 2288962 SNP 1 T C CDS Rv2043c pncA 2289241 2288681 560 - Phe 94 - Leu Phe94Leu ttc/ctc 279 279 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288962 2288962 SNP 1 T G CDS Rv2043c pncA 2289241 2288681 560 - Phe 94 - Val Phe94Val ttc/gtc 279 279 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2289000 2289000 SNP 1 T G CDS Rv2043c pncA 2289241 2288681 560 - Phe 81 - Cys Phe81Cys ttc/tgc 241 241 pyrazinamide (PZA) "WHO2018;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2289000 2289000 SNP 1 T C CDS Rv2043c pncA 2289241 2288681 560 - Phe 81 - Ser Phe81Ser ttc/tcc 241 241 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2289001 2289001 SNP 1 T A CDS Rv2043c pncA 2289241 2288681 560 - Phe 81 - Ile Phe81Ile ttc/atc 240 240 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2289001 2289001 SNP 1 T G CDS Rv2043c pncA 2289241 2288681 560 - Phe 81 - Val Phe81Val ttc/gtc 240 240 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2289069 2289069 SNP 1 T G CDS Rv2043c pncA 2289241 2288681 560 - Phe 58 - Cys Phe58Cys ttc/tgc 172 172 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2289069 2289069 SNP 1 T C CDS Rv2043c pncA 2289241 2288681 560 - Phe 58 - Ser Phe58Ser ttc/tcc 172 172 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2289070 2289070 SNP 1 T A CDS Rv2043c pncA 2289241 2288681 560 - Phe 58 - Ile Phe58Ile ttc/atc 171 171 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2289070 2289070 SNP 1 T G CDS Rv2043c pncA 2289241 2288681 560 - Phe 58 - Val Phe58Val ttc/gtc 171 171 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2289093 2289093 SNP 1 T G CDS Rv2043c pncA 2289241 2288681 560 - Phe 50 - Cys Phe50Cys ttc/tgc 148 148 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2289093 2289093 SNP 1 T C CDS Rv2043c pncA 2289241 2288681 560 - Phe 50 - Ser Phe50Ser ttc/tcc 148 148 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2289094 2289094 SNP 1 T A CDS Rv2043c pncA 2289241 2288681 560 - Phe 50 - Ile Phe50Ile ttc/atc 147 147 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2289094 2289094 SNP 1 T G CDS Rv2043c pncA 2289241 2288681 560 - Phe 50 - Val Phe50Val ttc/gtc 147 147 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2289204 2289204 SNP 1 T G CDS Rv2043c pncA 2289241 2288681 560 - Phe 13 - Cys Phe13Cys ttc/tgc 37 37 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2289204 2289204 SNP 1 T C CDS Rv2043c pncA 2289241 2288681 560 - Phe 13 - Ser Phe13Ser ttc/tcc 37 37 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2289204 2289204 SNP 1 T A CDS Rv2043c pncA 2289241 2288681 560 - Phe 13 - Tyr Phe13Tyr ttc/tac 37 37 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2289205 2289205 SNP 1 T A CDS Rv2043c pncA 2289241 2288681 560 - Phe 13 - Ile Phe13Ile ttc/atc 36 36 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2289205 2289205 SNP 1 T G CDS Rv2043c pncA 2289241 2288681 560 - Phe 13 - Val Phe13Val ttc/gtc 36 36 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2289068 2289068 SNP 1 C G CDS Rv2043c pncA 2289241 2288681 560 - Phe 58 - Leu Phe58Leu ttc/ttg 173 173 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2289068 2289068 SNP 1 C A CDS Rv2043c pncA 2289241 2288681 560 - Phe 58 - Leu Phe58Leu ttc/tta 173 173 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2289092 2289092 SNP 1 C G CDS Rv2043c pncA 2289241 2288681 560 - Phe 50 - Leu Phe50Leu ttc/ttg 149 149 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2289092 2289092 SNP 1 C A CDS Rv2043c pncA 2289241 2288681 560 - Phe 50 - Leu Phe50Leu ttc/tta 149 149 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288757 2288757 SNP 1 G C CDS Rv2043c pncA 2289241 2288681 560 - Gly 162 - Ala Gly162Ala ggt/gct 484 484 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2288757 2288757 SNP 1 G A CDS Rv2043c pncA 2289241 2288681 560 - Gly 162 - Asp Gly162Asp ggt/gat 484 484 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2288757 2288757 SNP 1 G T CDS Rv2043c pncA 2289241 2288681 560 - Gly 162 - Val Gly162Val ggt/gtt 484 484 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - -
2288758 2288758 SNP 1 G C CDS Rv2043c pncA 2289241 2288681 560 - Gly 162 - Arg Gly162Arg ggt/cgt 483 483 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288758 2288758 SNP 1 G A CDS Rv2043c pncA 2289241 2288681 560 - Gly 162 - Ser Gly162Ser ggt/agt 483 483 pyrazinamide (PZA) "YADON;Yadon et al 10.1038/s41467-017-00721-2" - not confirmed
2288793 2288793 SNP 1 G C CDS Rv2043c pncA 2289241 2288681 560 - Gly 150 - Ala Gly150Ala ggc/gcc 448 448 pyrazinamide (PZA) YADON - not confirmed
2288793 2288793 SNP 1 G A CDS Rv2043c pncA 2289241 2288681 560 - Gly 150 - Asp Gly150Asp ggc/gag 448 448 pyrazinamide (PZA) YADON - not confirmed
2288793 2288793 SNP 1 G T CDS Rv2043c pncA 2289241 2288681 560 - Gly 150 - Val Gly150Val ggc/gtc 448 448 pyrazinamide (PZA) YADON - not confirmed