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fq.gz is not always geneExpression #135

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allaway opened this issue Oct 12, 2023 · 1 comment

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allaway commented Oct 12, 2023 •

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This will cause some errors - this could also be WGS, WES, etc.

nfportalutils/R/annotation_reference.R

Line 63 in 58e8d84

if(grepl("[.]fq.gz$", filename)) return("geneExpression")

Contributor

anngvu commented Oct 12, 2023

Yeah, I think the refinement was to try to include assay context if possible. These are not bulletproof yet.

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