Merge pull request #3298 from nf-core/subworkflow-messages

mashehu · web-flow · commit f4b5b5d00764 · 2024-12-05T16:36:36.000+01:00
Improve subworkflow nf-test migration warning
diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -33,6 +33,7 @@
 ### Subworkflows
 
 - Add `nf-core subworkflows patch` command ([#2861](https://github.com/nf-core/tools/pull/2861))
+- Improve subworkflow nf-test migration warning ([#3298](https://github.com/nf-core/tools/pull/3298))
 
 ### General
 
diff --git a/nf_core/subworkflows/lint/subworkflow_tests.py b/nf_core/subworkflows/lint/subworkflow_tests.py
@@ -50,7 +50,7 @@ def subworkflow_tests(_, subworkflow: NFCoreComponent):
             subworkflow.warned.append(
                 (
                     "test_dir_exists",
-                    "nf-test directory is missing",
+                    "Migrate pytest-workflow to nf-test",
                     subworkflow.nftest_testdir,
                 )
             )

Original file line number	Diff line number	Diff line change
`@@ -50,7 +50,7 @@ def subworkflow_tests(_, subworkflow: NFCoreComponent):`
`50`	`50`	`subworkflow.warned.append(`
`51`	`51`	`(`
`52`	`52`	`"test_dir_exists",`
`53`		`- "nf-test directory is missing",`
	`53`	`+ "Migrate pytest-workflow to nf-test",`
`54`	`54`	`subworkflow.nftest_testdir,`
`55`	`55`	`)`
`56`	`56`	`)`