From f3fa0f0509a66832e33eced55ad00f1253eae4cd Mon Sep 17 00:00:00 2001 From: Phil Ewels Date: Mon, 18 Dec 2023 14:57:02 +0100 Subject: [PATCH 1/2] Remove docker.userEmulation This option is about to be stripped out of Nextflow itself, so we need to remove it from the nf-core template. See https://github.com/nextflow-io/nextflow/pull/4596 --- nf_core/pipeline-template/nextflow.config | 1 - 1 file changed, 1 deletion(-) diff --git a/nf_core/pipeline-template/nextflow.config b/nf_core/pipeline-template/nextflow.config index 31917a3e31..9029cff965 100644 --- a/nf_core/pipeline-template/nextflow.config +++ b/nf_core/pipeline-template/nextflow.config @@ -114,7 +114,6 @@ profiles { } docker { docker.enabled = true - docker.userEmulation = true conda.enabled = false singularity.enabled = false podman.enabled = false From cf6291cf082d9ceeb25e72fb84dd199d2535e0f3 Mon Sep 17 00:00:00 2001 From: mashehu Date: Mon, 18 Dec 2023 15:18:52 +0100 Subject: [PATCH 2/2] update changelog --- CHANGELOG.md | 1 + 1 file changed, 1 insertion(+) diff --git a/CHANGELOG.md b/CHANGELOG.md index b7365fa3f1..9e58b1f6e6 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -71,6 +71,7 @@ - Update Gitpod profile resources to reflect base environment settings. - ([#747](https://github.com/nf-core/tools/issues/747)) Add to the template the code to dump the selected pipeline parameters into a json file. - [#2161] Disable process selector warnings by default. +- Remove `docker.userEmulation` from nextflow.config in pipeline template ([#2580](https://github.com/nf-core/tools/pull/2580)) ### Download